print-pima.sh hbhorse-ML.pima > hbhorse-ML.pp

Page 1.1
                         1            15 16           30 31           45 46           60 61           75 76           90 
    1 hbhorse-ML         --------------- --------------- --------------- --------------- --------------- ---------------      0
    2 hbhorse-ML.7       --------------- --------------- --------------- --------------- --------------- ---------------      0
    3 hbhorse-ML.5.7     --------------- --------------- --------------- --------------- -AXXXKVXXXfhkXX XrfXpXXXXXfXXir     29
    4 hbhorse-ML.3.5.7   --------------- --------------- --------------- ---------ADKTNV KAAWhKVGhHAGEYG AEALERMFLhFPTTK     36

    5 hbhorse-ML.1.3.5.7 --------------- --------------- --------------- ---------ADKTNV KAAWGKVGAHAGEYG AEALERMFLSFPTTK     36
    6 1COHA.1.3.5.7      --------------- --------------- --------------- -----VLSPADKTNV KAAWGKVGAHAGEYG AEALERMFLSFPTTK     40
    7 hbahuman.1.3.5.7   --------------- --------------- --------------- -----VLSPADKTNV KAAWGKVGAHAGEYG AEALERMFLSFPTTK     40
    8 hbhorse-ML.2.3.5.7 --------------- --------------- --------------- --------AADKTNV KAAWSKVGGHAGEYG AEALERMFLGFPTTK     37

    9 2MHBA.2.3.5.7      --------------- --------------- --------------- -----VLSAADKTNV KAAWSKVGGHAGEYG AEALERMFLGFPTTK     40
   10 hbahorse.2.3.5.7   --------------- --------------- --------------- -----VLSAADKTNV KAAWSKVGGHAGEYG AEALERMFLGFPTTK     40
   11 hbhorse-ML.4.5.7   --------hAVXALW XKVNXkEVGGEALGR LLVVYPWTQRFFkSF GDLSsPXAVMGNPKV KAHGKKVLXhFhkGa XHLDNLKGTFAXLSE     82
   12 hbbhorse.4.5.7     VQLSGEEKAAVLALW DKVNEEEVGGEALGR LLVVYPWTQRFFDSF GDLSNPGAVMGNPKV KAHGKKVLHSFGEGV HHLDNLKGTFAALSE     90

   13 hbbhuman.4.5.7     VHLTPEEKSAVTALW GKVNVDEVGGEALGR LLVVYPWTQRFFESF GDLSTPDAVMGNPKV KAHGKKVLGAFSDGL AHLDNLKGTFATLSE     90
   14 hbhorse-ML.6.7     --------------- --------------- --------------- --------------- --AXahhXXrsXaXs fdXXXXsTfEsXXXX     28
   15 glb5petma.6.7      --------------- --------------- --------------- ---------PIVDTG SVAPLSAAEKTKIRS AWAPVYSTYETSGVD     36
   16 mygphyca.6.7       --------------- --------------- --------------V LSEGEWQLVLHVWAK VEADVAGHGQDILIR LFKSHPETLEKFDRF     46

   17 lgb2luplu          --------------- --------------- --------------- --------------- --------------- -GALTESQAALVKSS     14


Page 2.1
                         91          105 106         120 121         135 136         150 151         165 166         180 
    1 hbhorse-ML         --------------- ---------AXXXXX XXXXXXXXXXXXXXX XXA------------ --------------- ---------------     24
    2 hbhorse-ML.7       --------------- ---------AXXXXX XXXXXXXXXXXXXXX XXA------------ --------------- ---------------     24
    3 hbhorse-ML.5.7     XefXqfrasXXsfra XhrXXXfXXAXsXhX XeXXXfXXhfsXaXX XXA------------ --------------- ---------------     77
    4 hbhorse-ML.3.5.7   TYFPHFDLSHGSAQV KhHGKKVhDALTXAV hHaDDfPjALSXLSl LHAHKLRVDPVNFKL LSHCLLXTLAfHLPX kFTPAVHA-------    119

    5 hbhorse-ML.1.3.5.7 TYFPHFDLSHGSAQV KGHGKKVADALTNAV AHVDDMPNALSALSD LHAHKLRVDPVNFKL LSHCLLVTLAAHLPA EFTPAVHASLDKFLA    126
    6 1COHA.1.3.5.7      TYFPHFDLSHGSAQV KGHGKKVADALTNAV AHVDDMPNALSALSD LHAHKLRVDPVNFKL LSHCLLVTLAAHLPA EFTPAVHASLDKFLA    130
    7 hbahuman.1.3.5.7   TYFPHFDLSHGSAQV KGHGKKVADALTNAV AHVDDMPNALSALSD LHAHKLRVDPVNFKL LSHCLLVTLAAHLPA EFTPAVHASLDKFLA    130
    8 hbhorse-ML.2.3.5.7 TYFPHFDLSHGSAQV KAHGKKVGDALTLAV GHLDDLPGALSlLSl LHAHKLRVDPVNFKL LSHCLLSTLAVHLPN DFTPAVHA-------    120

    9 2MHBA.2.3.5.7      TYFPHFDLSHGSAQV KAHGKKVGDALTLAV GHLDDLPGALSDLSN LHAHKLRVDPVNFKL LSHCLLSTLAVHLPN DFTPAVHASLDKFLS    130
   10 hbahorse.2.3.5.7   TYFPHFDLSHGSAQV KAHGKKVGDALTLAV GHLDDLPGALSNLSD LHAHKLRVDPVNFKL LSHCLLSTLAVHLPN DFTPAVHASLDKFLS    130
   11 hbhorse-ML.4.5.7   LHCDKLHVDPENFRL LGNVLVfVLAqHFGK kFTPXaQAhYQKVVA GVANALA-------- --------------- ---------------    134
   12 hbbhorse.4.5.7     LHCDKLHVDPENFRL LGNVLVVVLARHFGK DFTPELQASYQKVVA GVANALAHKYH---- --------------- ---------------    146

   13 hbbhuman.4.5.7     LHCDKLHVDPENFRL LGNVLVCVLAHHFGK EFTPPVQAAYQKVVA GVANALAHKYH---- --------------- ---------------    146
   14 hbhorse-ML.6.7     XXaKXXXsXXAhokf XXqXXXaXTAXXfXX sXrXqerAEXXXXAX srAXXsXXXXrXfsf XXrXaXXXXXsseXX DXXfXXXXAfXXA--    116
   15 glb5petma.6.7      ILVKFFTSTPAAQEF FPKFKGLTTADQLKK SADVRWHAERIINAV NDAVASMDDTEKMSM KLRDLSGKHAKSFQV DPQYFKVLAAVIADT    126
   16 mygphyca.6.7       KHLKTEAEMKASEDL KKHGVTVLTALGAIL KKKGHHEAELKPLAQ SHATKHKIPIKYLEF ISEAIIHVLHSRHPG DFGADAQGAMNKALE    136

   17 lgb2luplu          WEEFNANIPKHTHRF FILVLEIAPAAKDLF SFLKGTSEVPQNNPE LQAHAGKVFKLVYEA AIQLQVTGVVVTDAT LKNLGSVHVSKGVAD    104


Page 3.1
                         181         195 196         210 211         225 226         240 241         255 256         270 
    1 hbhorse-ML         --------------- --------------- --------------- ----1     24
    2 hbhorse-ML.7       --------------- --------------- --------------- ----1     24
    3 hbhorse-ML.5.7     --------------- --------------- --------------- ----1     77
    4 hbhorse-ML.3.5.7   --------------- --------------- --------------- ----1    119

    5 hbhorse-ML.1.3.5.7 --------------- --------------- --------------- ----1    126
    6 1COHA.1.3.5.7      SVSTVLTSKYR---- --------------- --------------- ----1    141
    7 hbahuman.1.3.5.7   SVSTVLTSKYR---- --------------- --------------- ----1    141
    8 hbhorse-ML.2.3.5.7 --------------- --------------- --------------- ----1    120

    9 2MHBA.2.3.5.7      SVSTVLTSKYR---- --------------- --------------- ----1    141
   10 hbahorse.2.3.5.7   SVSTVLTSKYR---- --------------- --------------- ----1    141
   11 hbhorse-ML.4.5.7   --------------- --------------- --------------- ----1    134
   12 hbbhorse.4.5.7     --------------- --------------- --------------- ----1    146

   13 hbbhuman.4.5.7     --------------- --------------- --------------- ----1    146
   14 hbhorse-ML.6.7     --------------- --------------- --------------- ----1    116
   15 glb5petma.6.7      VAAGDAGFEKLMSMI CILLRSAY------- --------------- ----1    149
   16 mygphyca.6.7       LFRKDIAAKYKELGY QG------------- --------------- ----1    153

   17 lgb2luplu          AHFPVVKEAILKTIK EVVGAKWSEELNSAW TIAYDELAIVIKKEM NDAA1    153