Completed Bacteria Genomes collected resources

Gene annotation keyword search

Cross genome similarities

Gene family diagnostic Profiles
A B C D E F H I J K L M N O P Q R S T U V W X Y Z

Acidiphilium_cryptum_JF-5

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009467
Total Bases: 203589 bp
Number of genes: 187
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009468
Total Bases: 187422 bp
Number of genes: 179
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009469
Total Bases: 88953 bp
Number of genes: 81
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009470
Total Bases: 37415 bp
Number of genes: 33
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009471
Total Bases: 37155 bp
Number of genes: 32
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009472
Total Bases: 8781 bp
Number of genes: 10
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009473
Total Bases: 5629 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009474
Total Bases: 4909 bp
Number of genes: 6
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009484
Total Bases: 3389227 bp
Number of genes: 3159
Released: May 11, 2007.
Modified: June 25, 2007.
Primary publication: None

Acidobacteria bacterium Ellin345

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008009
Total Bases: 5650368 bp
Number of genes: 4834
Released: May 4, 2006.
Modified: May 10, 2006.
Primary publication: Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys.

Acidothermus cellulolyticus 11B

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008578
Total Bases: 2443540 bp
Number of genes: 2217
Released: Nov 9, 2006.
Modified: Nov 22, 2006.
Primary publication: None

Acidovorax avenae subsp. citrulli AAC00-1

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008752
Total Bases: 5352772 bp
Number of genes: 4858
Released: Jan 4, 2007.
Modified: Jan 5, 2007.
Primary publication: None

Acidovorax sp. JS42

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008765
Total Bases: 72689 bp
Number of genes: 85
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008782
Total Bases: 4448856 bp
Number of genes: 4225
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008766
Total Bases: 63609 bp
Number of genes: 73
Released: Jan 4 , 2007.
Modified: Jan 11, 2007.
Primary publication: None

Acinetobacter baumannii ATCC 17978

Sequenced by: Yale University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009083
Total Bases: 13408 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009085
Total Bases: 3976747 bp
Number of genes: 3454
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009084
Total Bases: 11302 bp
Number of genes: 5
Released: Mar 1, 2007.
Modified: May 2, 2007.
Primary publication: New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis.

Acinetobacter sp. ADP1

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005966
Total Bases: 3598621 bp
Number of genes: 3425
Released: Oct 30, 2004 .
Modified: Jan 17, 2006.
Primary publication: Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.

Actinobacillus pleuropneumoniae L20

Sequenced by: National Research Council of Canada
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009053
Total Bases: 2274482 bp
Number of genes: 2109
Released: Feb 23, 2007.
Modified: Aug 8, 2007.
Primary publication-1: Evaluation of an enzyme-linked immunosorbent assay for serological surveillance of infection with Actinobacillus pleuropneumoniae serotype 5 in pig herds.
Primary publication-2: Structure of the capsular polysaccharide of Actinobacillus pleuropneumoniae serotype 5b.
Primary publication-3: Structural studies of the O-chains of the lipopolysaccharides produced by strains of Actinobacillus (Haemophilus) pleuropneumoniae serotype 5.

Actinobacillus succinogenes 130Z ATCC55618

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009655
Total Bases: 2319663 bp
Number of genes: 2199
Released: Jul 5, 2007.
Modified: Jul 25, 2007.
Primary publication: None

Aeromonas hydrophila subsp. hydrophila ATCC 7966

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008570
Total Bases: 4744448 bp
Number of genes: 4287
Released: Nov 6, 2006.
Modified: Jul 3, 2007.
Primary publication: Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades.

Aeromonas salmonicida subsp. salmonicida A449

Sequenced by: National Research Council Canada - Institute of Marine Biosciences
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009348
Total Bases: 4702402 bp
Number of genes: 4388
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009349
Total Bases: 166749 bp
Number of genes: 178
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009350
Total Bases: 155098 bp
Number of genes: 164
Released: Apr 6, 2007.
Modified: Aug 9, 2007.
Primary publication: None

Aeropyrum pernix K1

Sequenced by: NITE
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000854
Total Bases: 1669695 bp
Number of genes: 1893
Released: Jun 26, 1999.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.

Agrobacterium tumefaciens str. C58 Cereon

Sequenced by: Cereon
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003062
Total Bases: 2841581 bp
Number of genes: 2760
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003063
Total Bases: 2074782 bp
Number of genes: 1852
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003064
Total Bases: 542869 bp
Number of genes: 547
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003065
Total Bases: 214233 bp
Number of genes: 201
Released: Dec 18, 2001.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Agrobacterium tumefaciens str. C58 U. Washington

Sequenced by: University of Washington
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003304
Total Bases: 2841490 bp
Number of genes: 2835
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003305
Total Bases: 2075560 bp
Number of genes: 1899
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003306
Total Bases: 542780 bp
Number of genes: 550
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003308
Total Bases: 214324 bp
Number of genes: 198
Released: Dec 18, 2001.
Modified: Jun 26, 2006.
Primary publication: Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Alcanivorax borkumensis SK2

Sequenced by: Bielefeld
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008260
Total Bases: 3120143 bp
Number of genes: 2806
Released: Jul 24, 2006.
Modified: Jul 28, 2006.
Primary publication: Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

Alkalilimnicola ehrlichei MLHE-1

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008340
Total Bases: 3275944 bp
Number of genes: 2940
Released: Sep 12, 2006.
Modified: Sep 14, 2006.
Primary publication: None

Alkaliphilus metalliredigens QYMF

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009633
Total Bases: 4929566 bp
Number of genes: 4941
Released: Jun 28, 2007.
Modified: Jul 3, 2007.
Primary publication: None

Anabaena variabilis ATCC 29413

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007413
Total Bases: 6363727 bp
Number of genes: 5134
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007410
Total Bases: 366354 bp
Number of genes: 350
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007411
Total Bases: 35762 bp
Number of genes: 32
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007412
Total Bases: 300758 bp
Number of genes: 247
Released: Sep 15, 2005.
Modified: Jun 16, 2006.
Primary publication: None

Anaeromyxobacter dehalogenans 2CP-C

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007760
Total Bases: 5013479 bp
Number of genes: 4419
Released: Jan 27, 2006.
Modified: Mar 31, 2006.
Primary publication: Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium.

Anaeromyxobacter sp. Fw109-5

Sequenced by: DOE Joint Genome Institute (JGI-PGF)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009675
Total Bases: 5277990 bp
Number of genes: 4562
Released: Jul 17, 2007.
Modified: Jul 25, 2007.
Primary publication: None

Anaplasma marginale str. St. Maries

Sequenced by: Washington State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004842
Total Bases: 1197687 bp
Number of genes: 1002
Released: Dec 8, 2004.
Modified: Dec 2, 2005.
Primary publication: Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins.

Anaplasma phagocytophilum HZ

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007797
Total Bases: 1471282 bp
Number of genes: 1411
Released: Feb 21, 2006.
Modified: Mar 30, 2006.
Primary publication: Comparative genomics of emerging human ehrlichiosis agents.

Aquifex aeolicus

Sequenced by: DIVERSA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000918
Total Bases: 1551335 bp
Number of genes: 1580
Released: Apr 16, 1998.
Modified: Dec 02, 2005.
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001880
Total Bases: 39456 bp
Number of genes: 31
Released: Apr 16, 1998.
Modified: Apr 03, 2006.
Primary publication: The complete genome of the hyperthermophilic bacterium Aquifex aeolicus

Archaeoglobus fulgidus DSM 4304

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000917
Total Bases: 2178400 bp
Number of genes: 2486
Released: Dec 6, 1997.
Modified: Jan 17, 2006.
Primary publication: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

Arthrobacter aurescens TC1

Sequenced by: TIGR
Sequenced by: University of Minnesota
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008711
Total Bases: 4597686 bp
Number of genes: 4208
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008712
Total Bases: 328237 bp
Number of genes: 297
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008713
Total Bases: 300725 bp
Number of genes: 275
Released: Dec 26, 2006.
Modified: Jan 23, 2007.
Primary publication: Secrets of Soil Survival Revealed by the Genome Sequence of Arthrobacter aurescens TC1.

Arthrobacter sp. FB24

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008541
Total Bases: 4698945 bp
Number of genes: 4241
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008537
Total Bases: 159538 bp
Number of genes: 160
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008538
Total Bases: 115507 bp
Number of genes: 108
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008539
Total Bases: 97488 bp
Number of genes: 96
Released: Oct 24, 2006 .
Modified: Oct 25, 2006 .
Primary publication: None

Aster yellows witches'-broom phytoplasma AYWB

Sequenced by: Ohio State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007716
Total Bases: 706569 bp
Number of genes: 706
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007717
Total Bases: 3972 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007718
Total Bases: 4009 bp
Number of genes: 4
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007719
Total Bases: 5104 bp
Number of genes: 7
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007720
Total Bases: 4316 bp
Number of genes: 6
Released: Jan 11, 2006 .
Modified: May 18, 2006 .
Primary publication: Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts.

Azoarcus sp. BH72

Sequenced by: Bielefeld University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008702
Total Bases: 4376040 bp
Number of genes: 4058
Released: Dec 20, 2006.
Modified: Aug 8, 2007.
Primary publication: Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72.

Azoarcus sp. EbN1

Sequenced by: Max Planck Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006513
Total Bases: 4296230 bp
Number of genes: 4203
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006823
Total Bases: 207355 bp
Number of genes: 274
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006824
Total Bases: 223670 bp
Number of genes: 196
Released: Nov 20, 2004 .
Modified: Jan 17, 2006 .
Primary publication: The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.

Bacillus amyloliquefaciens FZB42

Sequenced by: Competence Network
Sequenced by: Goettingen Genomics Laboratory
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009725
Total Bases: 3918589 bp
Number of genes: 3812
Released: Aug 1, 2007.
Modified: Aug 6, 2007.
Primary publication: None

Bacillus anthracis str. 'Ames Ancestor'

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007530
Total Bases: 5227419 bp
Number of genes: 5635
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007323
Total Bases: 94830 bp
Number of genes: 113
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007322
Total Bases: 181677 bp
Number of genes: 217
Released: May 20, 2004 .
Modified: Apr 3, 2006.
Primary publication: Genomics of the Bacillus cereus group of organisms.

Bacillus anthracis str. Ames

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003997
Total Bases: 5227293 bp
Number of genes: 5630
Released: May 2, 2003.
Modified: Dec 2, 2005 .
Primary publication: The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.

Bacillus anthracis str. Sterne

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005945
Total Bases: 5228663 bp
Number of genes: 5415
Released: Jun 24, 2004 .
Modified: Apr 3, 2006.
Primary publication: Genomics of the Bacillus cereus group of organisms.

Bacillus cereus ATCC 10987

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003909
Total Bases: 5224283 bp
Number of genes: 5772
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005707
Total Bases: 208369 bp
Number of genes: 242
Released: Feb 13, 2004 .
Modified: Aug 17, 2006 .
Primary publication: The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1.

Bacillus cereus ATCC 14579

Sequenced by: INRA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004722
Total Bases: 5411809 bp
Number of genes: 5476
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004721
Total Bases: 15274 bp
Number of genes: 21
Released: May 2, 2003.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis.

Bacillus cereus subsp. cytotoxis NVH 391-98

Sequenced by: DOE Joint Genome Institute
Sequenced by: INRA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009673
Total Bases: 7135 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009674
Total Bases: 4087024 bp
Number of genes: 4165
Released: Jul 17, 2007.
Modified: Jul 25, 2007.
Primary publication: Genomics of the Bacillus cereus group of organisms.

Bacillus cereus E33L

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006274
Total Bases: 5300915 bp
Number of genes: 5269
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007103
Total Bases: 466370 bp
Number of genes: 447
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007104
Total Bases: 5108 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007105
Total Bases: 53501 bp
Number of genes: 57
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007106
Total Bases: 8191 bp
Number of genes: 8
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007107
Total Bases: 9150 bp
Number of genes: 10
Released: Sep 16, 2004.
Modified: DEc 3, 2005.
Primary publication: Genomics of the Bacillus cereus group of organisms.

Bacillus clausii KSM-K16

Sequenced by: Kao Corporation, Biological Science Laboratories, Japan
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006582
Total Bases: 4303871 bp
Number of genes: 4204
Released: Jan 3, 2005.
Modified: Dec 2, 2005.
Primary publication-1: Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16.
Primary publication-2: High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism.

Bacillus halodurans C-125

Sequenced by: Japan AMSTEC
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002570
Total Bases: 4202352 bp
Number of genes: 4171
Released: Mar 23, 1999.
Modified: Dec 3, 2005.
Primary publication: 8 publications

Bacillus licheniformis ATCC 14580 ATCC14580

Sequenced by: Novozymes Biotech
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006270
Total Bases: 4222334 bp
Number of genes: 4290
Released: Oct 6, 2004.
Modified: Jan 18, 2006.
Primary publication: Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.

Bacillus licheniformis DSM 13

Sequenced by: Gottingen Genomics Laboratory
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006322
Total Bases: bp
Number of genes:
Released: Sep 24, 2004.
Modified: Jan 26, 2007.
Primary publication: The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential.

Bacillus subtilis subsp. subtilis str. 168

Sequenced by: BSNR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000964
Total Bases: 4214630 bp
Number of genes: 4225
Released: Dec 31, 1997.
Modified: Aug 14, 2007.
Primary publication: The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Bacillus thuringiensis serovar konkukian str. 97-27

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005957
Total Bases: 5237682 bp
Number of genes: 5261
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006578
Total Bases: 77112 bp
Number of genes: 80
Released: Jun 30, 2004.
Modified: Jun 22, 2007.
Primary publication-1: Bacillus thuringiensis subsp. konkukian (serotype H34) superinfection: case report and experimental evidence of pathogenicity in immunosuppressed mice.
Primary publication-2: Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis.
Primary publication-3: Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates.

Bacillus thuringiensis str. Al Hakam

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008598
Total Bases: 55939 bp
Number of genes: 62
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008600
Total Bases: 5257091 bp
Number of genes: 4883
Released: Nov 27, 2006.
Modified: Apr 18, 2007.
Primary publication: The complete genome sequence of Bacillus thuringiensis Al Hakam.

Bacteroides fragilis NCTC 9343 ATCC 25285

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003228
Total Bases: 5205140 bp
Number of genes: 4347
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006873
Total Bases: 36560 bp
Number of genes: 48
Released: Mar 3, 2005.
Modified: Dec 3, 2005.
Primary publication: Extensive DNA inversions in the B. fragilis genome control variable gene expression.

Bacteroides fragilis YCH46

Sequenced by: Kitasato University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006347
Total Bases: 5277274 bp
Number of genes: 4670
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006297
Total Bases: 33716 bp
Number of genes: 47
Released: Oct 15, 2004.
Modified: Dec 3, 2005.
Primary publication: Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation.

Bacteroides thetaiotaomicron VPI-5482

Sequenced by: Washington University Department of Molecular
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004663
Total Bases: 6260361 bp
Number of genes: 4864
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004703
Total Bases: 33038 bp
Number of genes: 38
Released: Mar 29, 2003.
Modified: Feb 1, 2007.
Primary publication: A genomic view of the human-Bacteroides thetaiotaomicron symbiosis.

Bacteroides vulgatus ATCC 8482

Sequenced by: Washington University (WashU)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009614
Total Bases: 5163189 bp
Number of genes: 4183
Released: Jun 27, 2007.
Modified: Jun 29, 2007.
Primary publication: Evolution of Symbiotic Bacteria in the Distal Human Intestine.

Bartonella bacilliformis KC583

Sequenced by: TIGR
Sequenced by: National Center for Biotechnology Information
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00878
Total Bases: 1445021 bp
Number of genes: 1375
Released: Jan 4, 2007.
Modified: Jan 11, 2007.
Primary publication: None

Bartonella henselae str. Houston-1

Sequenced by: Uppsala University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005956
Total Bases: 1931047 bp
Number of genes: 1665
Released: Jun 24, 2004.
Modified: Dec 3, 2005.
Primary publication: The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae.

Bartonella quintana str. Toulouse

Sequenced by: Uppsala University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005955
Total Bases: 1581384 bp
Number of genes: 1356
Released: Jun 24, 2004.
Modified: Dec 3, 2005.
Primary publication: The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae.

Baumannia cicadellinicola str. Hc (Homalodisca coagulata)

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007984
Total Bases: 686194 bp
Number of genes: 651
Released: Apr 27, 2006.
Modified: Jan 26, 2007.
Primary publication: Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters.

Bdellovibrio bacteriovorus HD100

Sequenced by: Max-Planck-Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005363
Total Bases: bp
Number of genes:
Released: Jan 31, 2004.
Modified: Jun 22, 2007.
Primary publication: A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective.

Bifidobacterium adolescentis ATCC 15703

Sequenced by: Gifu University, Life Science Research Center, Japan
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008618
Total Bases: 2089645 bp
Number of genes: 1701
Released: Dec 5, 2006.
Modified: Aug 8, 2007.
Primary publication: None

Bifidobacterium longum NCC2705

Sequenced by: Nestle Research Center, Switzerland
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004307
Total Bases: 2256640 bp
Number of genes: 1798
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004943
Total Bases: 3626 bp
Number of genes: 2
Released: Oct 17, 2002.
Modified: Jan 17, 2006.
Primary publication: The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Bordetella bronchiseptica RB50

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002927
Total Bases: 5339179 bp
Number of genes: 5072
Released: Aug 12, 2003.
Modified: Jun 7, 2007.
Primary publication: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Bordetella parapertussis 12822

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002928
Total Bases: 4773551 bp
Number of genes: 4467
Released: Aug 12, 2003.
Modified: Jan 18, 2006.
Primary publication: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Bordetella pertussis Tohama I

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002929
Total Bases: 4086189 bp
Number of genes: 3867
Released: Aug 12, 2003.
Modified: Jan 18, 2006.
Primary publication: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Borrelia afzelii PKo

Sequenced by: Fritz Lipmann Institute, Germany, Jena
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008277
Total Bases: 905394 bp
Number of genes: 894
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008564
Total Bases: 59958 bp
Number of genes: 75
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008565
Total Bases: 59804 bp
Number of genes: 59
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008566
Total Bases: 34273 bp
Number of genes: 36
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008567
Total Bases: 32368 bp
Number of genes: 55
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008568
Total Bases: 28533 bp
Number of genes: 34
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008569
Total Bases: 24794 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008273
Total Bases: 30017 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008273
Total Bases: 30017 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008274
Total Bases: 26533 bp
Number of genes: 28
Released: Jul 31, 2006.
Modified: Aug 9, 2007.
Primary publication: Monoclonal antibodies for identification of Borrelia afzelii sp. nov. associated with late cutaneous manifestations of Lyme borreliosis.

Borrelia burgdorferi B31

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001318
Total Bases: 910724 bp
Number of genes: 875
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001904
Total Bases: 9386 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001903
Total Bases: 26498 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000948
Total Bases: 30750 bp
Number of genes: 42
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000949
Total Bases: 30223 bp
Number of genes: 45
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000950
Total Bases: 30299 bp
Number of genes: 44
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000951
Total Bases: 29838 bp
Number of genes: 42
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000952
Total Bases: 30800 bp
Number of genes: 44
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000953
Total Bases: 30885 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000954
Total Bases: 30651 bp
Number of genes: 38
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000957
Total Bases: 5228 bp
Number of genes: 6
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000955
Total Bases: 18753 bp
Number of genes: 12
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000956
Total Bases: 52971 bp
Number of genes: 82
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001849
Total Bases: 16823 bp
Number of genes: 25
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001850
Total Bases: 24177 bp
Number of genes: 32
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001851
Total Bases: 26921 bp
Number of genes: 32
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001852
Total Bases: 29766 bp
Number of genes: 34
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001853
Total Bases: 28601 bp
Number of genes: 40
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001854
Total Bases: 27323 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001855
Total Bases: 36849 bp
Number of genes: 54
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001856
Total Bases: 38829 bp
Number of genes: 52
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001857
Total Bases: 53561 bp
Number of genes: 76
Released: Dec 24, 1997.
Modified: Aug 8, 2007.
Primary publication: Cross-species hybridization of a Borrelia burgdorferi DNA array reveals infection- and culture-associated genes of the unsequenced genome of the relapsing fever agent Borrelia hermsii.

Borrelia garinii PBi

Sequenced by: Institute for Molecular Biotechnology, Germany
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006156
Total Bases: 904246 bp
Number of genes: 869
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006128
Total Bases: 27108 bp
Number of genes: 26
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006129
Total Bases: 55560 bp
Number of genes: 74
Released: Nov 18, 2004.
Modified: Jun 29, 2007.
Primary publication: Comparative analysis of the Borrelia garinii genome.

Bradyrhizobium sp. BTAi1

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009475
Total Bases: 228826 bp
Number of genes: 257
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009485
Total Bases: 8264687 bp
Number of genes: 7553
Released: May 11, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Bradyrhizobium japonicum USDA 110

Sequenced by: Kazusa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004463
Total Bases: 9105828 bp
Number of genes: 8373
Released: Feb 25, 2003.
Modified: Jan 29, 2007.
Primary publication: Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110.

Bradyrhizobium sp. ORS278

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009445
Total Bases: 7456587 bp
Number of genes: 6818
Released: May 1, 2007.
Modified: Aug 14, 2007.
Primary publication-1: Photosynthetic bradyrhizobia are natural endophytes of the African wild rice Oryza breviligulata.
Primary publication-2: Effect of Bradyrhizobium photosynthesis on stem nodulation of Aeschynomene sensitiva.
Primary publication-3: Isolation and characterization of canthaxanthin biosynthesis genes from the photosynthetic bacterium Bradyrhizobium sp. strain ORS278.

Brucella abortus biovar 1 str. 9-941

Sequenced by: University of Minnesota
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006932
Total Bases: 2124241 bp
Number of genes: 2200
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006933
Total Bases: 1162204 bp
Number of genes: 1156
Released: Apr 5, 2005.
Modified: Jan 18, 2006.
Primary publication: Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis.

Brucella melitensis 16M

Sequenced by: Integrated Genomics
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003317
Total Bases: 2117144 bp
Number of genes: 2107
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003318
Total Bases: 1177787 bp
Number of genes: 1157
Released: Jan 5, 2002.
Modified: Dec 2, 2005.
Primary publication-1: The genome sequence of the facultative intracellular pathogen Brucella melitensis.
Primary publication-2: The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts.

Brucella melitensis biovar Abortus 2308

Sequenced by: Oak Ridge National Laboratory
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007618
Total Bases: 2121359 bp
Number of genes: 2236
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007624
Total Bases: 1156948 bp
Number of genes: 1182
Released: Nov 22, 2005.
Modified: Jan 18, 2006.
Primary publication: Whole-genome analyses of speciation events in pathogenic Brucellae.

Brucella ovis ATCC 25840

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009504
Total Bases: 1164220 bp
Number of genes: 1104
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009505
Total Bases: 2111370 bp
Number of genes: 2094
Released: May 30, 2007.
Modified: Jul 2, 2007.
Primary publication: None

Brucella suis 1330

Sequenced by: NITE/TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004310
Total Bases: 2107794 bp
Number of genes: 2231
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004311
Total Bases: 1207381 bp
Number of genes: 1220
Released: Sep 25, 2002.
Modified: Dec 2, 2005.
Primary publication: The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts.

Buchnera aphidicola str. APS (Acyrthosiphon pisum)

Sequenced by: Rikken GSC, Japan
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002528
Total Bases: 640681 bp
Number of genes: 607
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002253
Total Bases: 7786 bp
Number of genes: 7
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002252
Total Bases: 7258 bp
Number of genes: 4
Released: Sep 19, 2000.
Modified: Jun 7, 2007.
Primary publication: Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS.

Buchnera aphidicola str. Bp (Baizongia pistaciae)

Sequenced by: Valencia University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004545
Total Bases: 615980 bp
Number of genes: 550
Released: Jan 11, 2003.
Modified: Dec 2, 2005.
Primary publication: Reductive genome evolution in Buchnera aphidicola.

Buchnera aphidicola str. Cc (Cinara cedri)

Sequenced by: Valencia University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: 416380 bp
Number of genes: 397
Released: Oct 18, 2006.
Modified: Oct 25, 2006.
Primary publication: A small microbial genome: the end of a long symbiotic relationship?

Buchnera aphidicola str. Sg (Schizaphis graminum)

Sequenced by: Uppsala University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004061
Total Bases: 641454 bp
Number of genes: 619
Released: Jun 29, 2002.
Modified: Apr 3, 2006.
Primary publication: 50 million years of genomic stasis in endosymbiotic bacteria.

Burkholderia cenocepacia AU 1054

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008060
Total Bases: 3294563 bp
Number of genes: 3054
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008061
Total Bases: 2788459 bp
Number of genes: 2504
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008062
Total Bases: 1196094 bp
Number of genes: 1074
Released: Jun 1, 2006.
Modified: Jun 19, 2007.
Primary publication:

Burkholderia cenocepacia HI2424

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008542
Total Bases: 3483902 bp
Number of genes: 3238
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008545
Total Bases: 164857 bp
Number of genes: 159
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008543
Total Bases: 2998664 bp
Number of genes: 2707
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008544
Total Bases: 1055417 bp
Number of genes: 927
Released: Oct 25, 2006.
Modified: Aug 14, 2007.
Primary publication: An epidemic Burkholderia cepacia complex strain identified in soil.

Burkholderia cepacia AMMD

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008390
Total Bases: 3556545 bp
Number of genes: 3294
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008391
Total Bases: 2646969 bp
Number of genes: 2364
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008392
Total Bases: 1281472 bp
Number of genes: 1021
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008385
Total Bases: 43581 bp
Number of genes: 45
Released: Sep 21, 2006.
Modified: Sep 27, 2006.
Primary publication: Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates.

Burkholderia mallei ATCC 23344

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006349
Total Bases: 2325379 bp
Number of genes: 2115
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006348
Total Bases: 3510148 bp
Number of genes: 3394
Released: Sep 21, 2004.
Modified: Jan 18, 2006.
Primary publication: Structural flexibility in the Burkholderia mallei genome.

Burkholderia mallei NCTC 10229

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008835
Total Bases: 2284095 bp
Number of genes: 2215
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008836
Total Bases: 3458208 bp
Number of genes: 3409
Released: Jan 30, 2007.
Modified: Feb 11, 2007.
Primary publication: None

Burkholderia mallei NCTC 10247

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009079
Total Bases: 2352693 bp
Number of genes: 2412
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009080
Total Bases: 3495687 bp
Number of genes: 3554
Released: Feb 27, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Burkholderia mallei SAVP1

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008784
Total Bases: 1734922 bp
Number of genes: 1763
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008785
Total Bases: 3497479 bp
Number of genes: 3532
Released: Jan 5, 2007.
Modified: Jan 11, 2007.
Primary publication: None

Burkholderia pseudomallei 1106a

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009076
Total Bases: 3988455 bp
Number of genes: 4085
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009078
Total Bases: 3100794 bp
Number of genes: 3178
Released: Feb 27, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Burkholderia pseudomallei 1710b

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007434
Total Bases: 4126292 bp
Number of genes: 3799
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007435
Total Bases: 3181762 bp
Number of genes: 2621
Released: Sep 30, 2005.
Modified: Apr 3, 2006.
Primary publication:

Burkholderia pseudomallei 668

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009074
Total Bases: 3912947 bp
Number of genes: 4013
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009075
Total Bases: 3127456 bp
Number of genes: 3294
Released: Feb 27, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Burkholderia pseudomallei K96243

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006350
Total Bases: 4074542 bp
Number of genes: 3529
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006351
Total Bases: 3173005 bp
Number of genes: 2406
Released: Sep 21, 2004.
Modified: Aug 14, 2007.
Primary publication: Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.

Burkholderia sp. 383

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007509
Total Bases: 1395069 bp
Number of genes: 1221
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007511
Total Bases: 3587082 bp
Number of genes: 3189
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007510
Total Bases: 3694126 bp
Number of genes: 3416
Released: Apr 2, 2004.
Modified: Apr 3, 2006.
Primary publication: None

Burkholderia thailandensis E264

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007650
Total Bases: 2914771 bp
Number of genes: 2371
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007651
Total Bases: 3809201 bp
Number of genes: 3343
Released: Dec 15, 2005.
Modified: Jan 18, 2006.
Primary publication: Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies.

Burkholderia vietnamiensis G4

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009226
Total Bases: 88096 bp
Number of genes: 111
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009254
Total Bases: 1241007 bp
Number of genes: 1171
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009227
Total Bases: 265616 bp
Number of genes: 272
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009255
Total Bases: 2411759 bp
Number of genes: 2148
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009228
Total Bases: 107231 bp
Number of genes: 112
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009256
Total Bases: 3652814 bp
Number of genes: 3389
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009229
Total Bases: 226679 bp
Number of genes: 251
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009230
Total Bases: 397868 bp
Number of genes: 409
Released: Mar 27, 2007.
Modified: Mar 30, 2007.
Primary publication: None

Burkholderia xenovorans LB400

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007952
Total Bases: 3363523 bp
Number of genes: 3046
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007953
Total Bases: 1471779 bp
Number of genes: 1388
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007951
Total Bases: 4895836 bp
Number of genes: 4609
Released: Apr 10, 2006.
Modified: Apr 13, 2006.
Primary publication: None

Caldicellulosiruptor saccharolyticus DSM 8903

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009437
Total Bases: 2970275 bp
Number of genes: 2829
Released: Apr 19, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Campylobacter curvus 525.92

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009715
Total Bases: 1971264 bp
Number of genes: 2102
Released: Jul 25, 2007.
Modified: Jul 30, 2007.
Primary publication: None

Campylobacter fetus subsp. fetus 82-40

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008599
Total Bases: 1773615 bp
Number of genes: 1820
Released: Nov 27, 2006.
Modified: Nov 30, 2006.
Primary publication: None

Campylobacter hominis ATCC BAA-381

Sequenced by: J. Craig Venter Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009713
Total Bases: 3678 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009714
Total Bases: 1711273 bp
Number of genes: 1799
Released: Jul 25, 2007.
Modified: Jul 30, 2007.
Primary publication: None

Campylobacter jejuni RM1221

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003912
Total Bases: 1777831 bp
Number of genes: 1937
Released: Jan 7, 2005.
Modified: Jun 20, 2007.
Primary publication: Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.

Campylobacter jejuni subsp. doylei 269.97

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009707
Total Bases: 1845106 bp
Number of genes: 2037
Released: Jul 20, 2007.
Modified: Jul 27, 2007.
Primary publication: None

Campylobacter jejuni subsp. jejuni 81-176

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008770
Total Bases: 37473 bp
Number of genes: 53
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008787
Total Bases: 1616554 bp
Number of genes: 1707
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008790
Total Bases: 45025 bp
Number of genes: 52
Released: Jan 9, 2007.
Modified: Jan 11, 2007.
Primary publication: Experimental Campylobacter jejuni infection in Macaca nemestrina.

Campylobacter jejuni subsp. jejuni NCTC 11168

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002163
Total Bases: 1641481 bp
Number of genes: 1705
Released: Feb 25, 2000.
Modified: Apr 30, 2007.
Primary publication: The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences.

Candidatus Blochmannia floridanus

Sequenced by: University of Valencia
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005061
Total Bases: 705557 bp
Number of genes: 631
Released: Jul 30, 2003.
Modified: Jan 26, 2007.
Primary publication: The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes.

Candidatus Blochmannia pennsylvanicus str. BPEN

Sequenced by: Josephine Bay Paul Center
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007292
Total Bases: 791654 bp
Number of genes: 658
Released: Aug 4, 2005.
Modified: Dec 3, 2005.
Primary publication: Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.

Candidatus Carsonella ruddii PV

Sequenced by: Kitasato Institute for Life Sciences
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008512
Total Bases: 159662 bp
Number of genes: 213
Released: Oct 16, 2006.
Modified: Oct 22, 2006.
Primary publication: The 160-kilobase genome of the bacterial endosymbiont Carsonella.

Candidatus Methanoregula boonei 6A8

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009712
Total Bases: 2542943 bp
Number of genes: 2513
Released: Jul 26, 2007.
Modified: Jul 30, 2007.
Primary publication: None

Candidatus Pelagibacter ubique HTCC1062

Sequenced by: Oregon State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007205
Total Bases: 1308759 bp
Number of genes: 1389
Released: Jul 22, 2005.
Modified: Jan 27, 2007.
Primary publication: Genome streamlining in a cosmopolitan oceanic bacterium.

Candidatus Protochlamydia amoebophila UWE25

Sequenced by: University of Vienna, Austria
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005861
Total Bases: 2414465 bp
Number of genes: 2075
Released: Apr 10, 2004.
Modified: Dec 19, 2005.
Primary publication: lluminating the evolutionary history of chlamydiae.

Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) Calyptogena magnifica

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008610
Total Bases: 1160782 bp
Number of genes: 1117
Released: Dec 1, 2006.
Modified: Feb 26, 2007.
Primary publication: The Calyptogena magnifica chemoautotrophic symbiont genome.

2Candidatus Vesicomyosocius okutanii HA

Sequenced by: Japan Agency for Maine-Earth Science and Technology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009465
Total Bases: 1022154 bp
Number of genes:
Released: May 8, 2007.
Modified: Aug 14, 2007.
Primary publication: Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii.

Carboxydothermus hydrogenoformans Z-2901

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007503
Total Bases: 2401520 bp
Number of genes: 2707
Released: Oct 21, 2005.
Modified: Mar 30, 2006.
Primary publication: Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.

Caulobacter crescentus CB15

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002696
Total Bases: 4016947 bp
Number of genes: 3819
Released: Mar 22, 2001.
Modified: Jun 7, 2007.
Primary publication: Complete genome sequence of Caulobacter crescentus.

Chlamydia muridarum Nigg

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002620
Total Bases: 1072950 bp
Number of genes: 955
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002182
Total Bases: 7501 bp
Number of genes: 7
Released: Feb 24, 2000.
Modified: Jan 9, 2006.
Primary publication: Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

Chlamydia trachomatis A/HAR-13

Sequenced by: Lab of Human Bacterial Pathogenesis
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007429
Total Bases: 1044459 bp
Number of genes: 953
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007430
Total Bases: 7510 bp
Number of genes: 8
Released: Sep 23, 2005.
Modified: Jun 26, 2007.
Primary publication: Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains.

Chlamydia trachomatis D/UW-3/CX

Sequenced by: Stanford University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000117
Total Bases: 1042519 bp
Number of genes: 940
Released: Oct 23, 1998.
Modified: Jan 18, 2006.
Primary publication: Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.

Chlamydophila abortus S26/3

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004552
Total Bases: 1144377 bp
Number of genes: 1003
Released: Apr 1, 2005.
Modified: Sep 14, 2006.
Primary publication: The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.

Chlamydophila caviae GPIC

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003361
Total Bases: 1173390 bp
Number of genes: 1053
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004720
Total Bases: 7966 bp
Number of genes: 7
Released: Apr 12, 2003.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.

Chlamydophila felis Fe/C-56

Sequenced by: Japanese Consortium/Yamaguchi University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007899
Total Bases: 1166239 bp
Number of genes: 1046
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007900
Total Bases: 7552 bp
Number of genes: 8
Released: Mar 9, 2006.
Modified: Jan 27, 2007.
Primary publication: Genome sequence of the cat pathogen, Chlamydophila felis.

Chlamydophila pneumoniae AR39

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002179
Total Bases: 1229853 bp
Number of genes: 1167
Released: Feb 24, 2000.
Modified: Jan 6, 2006.
Primary publication: Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

Chlamydophila pneumoniae CWL029

Sequenced by: ChGP
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000922
Total Bases: 1230230 bp
Number of genes: <1122/li>
Released: Apr 7, 1999.
Modified: May 30, 2007.
Primary publication: Comparative genomes of Chlamydia pneumoniae and C. trachomatis.

Chlamydophila pneumoniae J138

Sequenced by: Yamaguchi/Kyushu University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002491
Total Bases: 1226565 bp
Number of genes: 1107
Released: Jun 28, 2000.
Modified: Jun 6, 2007.
Primary publication: Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA.

Chlamydophila pneumoniae TW-183

Sequenced by: ALTANA Pharma
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005043
Total Bases: 1225935 bp
Number of genes: 1155
Released: Jul 25, 2003.
Modified: Jan 16, 2006.
Primary publication: None

Chlorobium chlorochromatii CaD3

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007514
Total Bases: 2572079 bp
Number of genes: 2047
Released: Oct 26, 2005.
Modified: Aug 9, 2007.
Primary publication: Physiology and tactic response of the phototrophic consortium "Chlorochromatium aggregatum"

Chlorobium tepidum TLS

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002932
Total Bases: 2154946 bp
Number of genes: 2344
Released: Jul 3, 2002.
Modified: Dec 2, 2005.
Primary publication: The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.

Chromobacterium violaceum ATCC 12472

Sequenced by: LNCC, Brazil
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005085
Total Bases: 4751080 bp
Number of genes: 4529
Released: Sep 23, 2003.
Modified: Jun 22, 2007.
Primary publication: The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability.

Chromohalobacter salexigens DSM 3043

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007963
Total Bases: 3696649 bp
Number of genes: 3409
Released: Apr 11, 2006.
Modified: Apr 17, 2006.
Primary publication: None

Clavibacter michiganensis subsp. michiganensis NCPPB 382

Sequenced by: Center For Biotechnology, Bielefeld University, Germany
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009480
Total Bases: 3297891 bp
Number of genes: 3167
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009478
Total Bases: 27357 bp
Number of genes: 28
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009479
Total Bases: 69989 bp
Number of genes: 72
Released: May 19, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Clostridium acetobutylicum ATCC 824

Sequenced by: Oscient Genome Therapeutics
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003030
Total Bases: 3940880 bp
Number of genes: 3844
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001988
Total Bases: 192000 bp
Number of genes: 178
Released: Jul 24, 2001.
Modified: Jan 18, 2006.
Primary publication: Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.

Clostridium beijerinckii NCIMB 8052

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009617
Total Bases: 6000632 bp
Number of genes: 5243
Released: Jun 27, 2007.
Modified: Jun 29, 2007.
Primary publication: None

Clostridium botulinum A str. ATCC 3502

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009496
Total Bases: 16344 bp
Number of genes: 19
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009495
Total Bases: 3886916 bp
Number of genes: 3776
Released: May 24, 2007.
Modified: Aug 14, 2007.
Primary publication: Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes.

Clostridium botulinum A str. ATCC 19397

Sequenced by: Los Alamos National Laboratory
Sequenced by: DOE Joint Genome Institute
Sequenced by: J. Craig Venter Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009697
Total Bases: 3863450 bp
Number of genes: 3694
Released: Jul 20, 2007.
Modified: Jul 27, 2007.
Primary publication: None

Clostridium botulinum A str. Hall

Sequenced by: Los Alamos National Laboratory
Sequenced by: DOE Joint Genome Institute
Sequenced by: J. Craig Venter Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009698
Total Bases: 3760560 bp
Number of genes: 3612
Released: Jul 20, 2007.
Modified: Jul 27, 2007.
Primary publication: None

Clostridium botulinum F str. Langeland

Sequenced by: Los Alamos National Laboratory
Sequenced by: DOE Joint Genome Institute
Sequenced by: J. Craig Venter Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009699
Total Bases: 3995387 bp
Number of genes: 3829
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009700
Total Bases: 17531 bp
Number of genes: 24
Released: Jul 20, 2007.
Modified: Jul 27, 2007.
Primary publication: None

Clostridium difficile 630

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009089
Total Bases: 4290252 bp
Number of genes: 3971
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008226
Total Bases: 7881 bp
Number of genes: 11
Released: Sep 20, 2006.
Modified: Aug 14, 2007.
Primary publication: The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome.

Clostridium kluyveri DSM 555

Sequenced by: Gottingen Genomics Laboratory G2L
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009706
Total Bases: 3964618 bp
Number of genes: 3919
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009466
Total Bases: 59182 bp
Number of genes: 75
Released: Jul 19, 2007.
Modified: Jul 27, 2007.
Primary publication: None

Clostridium novyi NT

Sequenced by: Johns Hopkins Kimmel Comprehensive Cancer Center
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008593
Total Bases: 2547720 bp
Number of genes: 2427
Released: Nov 17, 2006.
Modified: Aug 8, 2007.
Primary publication-1: The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT.
Primary publication-2: Pharmacologic and toxicologic evaluation of C. novyi-NT spores.
Primary publication-3: Bacteriolytic therapy can generate a potent immune response against experimental tumors.
Primary publication-4: Targeting vascular and avascular compartments of tumors with C. novyi-NT and anti-microtubule agents.

Clostridium perfringens ATCC 13124

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008261
Total Bases: 3256683 bp
Number of genes: 3016
Released: Jul 25, 2006.
Modified: Aug 14, 2007.
Primary publication: Molecular genetics and pathogenesis of Clostridium perfringens.

Clostridium perfringens SM101

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008262
Total Bases: 2897393 bp
Number of genes: 2671
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008263
Total Bases: 12397 bp
Number of genes: 10
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008264
Total Bases: 12206 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008265
Total Bases: 38092 bp
Number of genes: 54
Released: Jul 26, 2006.
Modified: Aug 14, 2007.
Primary publication: Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.

Clostridium perfringens str. 13

Sequenced by: University Kyushu
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003366
Total Bases: 3031430bp
Number of genes: 2786
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003042
Total Bases: 54310 bp
Number of genes: 63
Released: Jan 17, 2002.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.

Clostridium tetani E88

Sequenced by: Goettingen Genomics Laboratory
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004557
Total Bases: 2799251 bp
Number of genes: 2445
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004565
Total Bases: 74082 bp
Number of genes: 61
Released: Jan 29, 2003.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of Clostridium tetani, the causative agent of tetanus disease.

Clostridium thermocellum ATCC 27405

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009012
Total Bases: 3843301 bp
Number of genes: 3307
Released: Feb 14, 2007.
Modified: Feb 16, 2007.
Primary publication: None

Colwellia psychrerythraea 34H

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003910
Total Bases: 5373180 bp
Number of genes: 5054
Released: Jul 26, 2005.
Modified: Jan 17, 2006.
Primary publication: The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.

Corynebacterium diphtheriae NCTC 13129

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002935
Total Bases: 2488635 bp
Number of genes: 2389
Released: Nov 7, 2003.
Modified: Dec 3, 2005.
Primary publication: The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.

Corynebacterium efficiens YS-314

Sequenced by: NITE
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004369
Total Bases: 3147090 bp
Number of genes: 3020
Released: Jul 4, 2003.
Modified: Dec 2, 2005.
Primary publication: Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.

Corynebacterium glutamicum ATCC 13032 Kitasato

Sequenced by: Kitasato University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: 3309401 bp
Number of genes: 3074
Released: Sep 2, 2003.
Modified: Jan 6, 2006.
Primary publication: The Corynebacterium glutamicum genome: features and impacts on biotechnological processes.

Corynebacterium glutamicum ATCC 13032 Bielefeld

Sequenced by: Universitaet Bielefeld
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006958
Total Bases: 3282708 bp
Number of genes: 3138
Released: Jan 26, 2004.
Modified: Aug 8, 2007.
Primary publication: The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.

Corynebacterium glutamicum R

Sequenced by: Research Institute of Innovative Technology for the Earth RITE), Microbiology research group
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009342
Total Bases: 3314179 bp
Number of genes: 3128
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009343
Total Bases: 49120 bp
Number of genes: 28
Released: Apr 4, 2007.
Modified: Aug 8, 2007.
Primary publication: Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R.

Corynebacterium jeikeium K411

Sequenced by: Bielefeld University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007164
Total Bases: 2462499 bp
Number of genes: 2165
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003080
Total Bases: 14323 bp
Number of genes: 16
Released: Jun 27, 2005.
Modified: Mar 30, 2006.
Primary publication: Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.

Coxiella burnetii Dugway 7E9-12

Sequenced by: J. Craig Venter Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009726
Total Bases: 54179 bp
Number of genes: 70
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009727
Total Bases: 2158758 bp
Number of genes: 2194
Released: Aug 1, 2007.
Modified: Aug 6, 2007.
Primary publication: None

Coxiella burnetii RSA 493

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002971
Total Bases: 1995281 bp
Number of genes: 2143
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004704
Total Bases: 37393 bp
Number of genes: 40
Released: Apr 22, 2003.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence of the Q-fever pathogen Coxiella burnetii.

Synechococcus sp. JA-3-3Ab A-Prime

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007775
Total Bases: 2932766 bp
Number of genes: 2897
Released: Feb 7, 2006.
Modified: Aug 14, 2007.
Primary publication: Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.

Synechococcus sp. JA-2-3B'a(2-13)

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007776
Total Bases: 3046682 bp
Number of genes: 2942
Released: Feb 7, 2007.
Modified: Aug 14, 2007.
Primary publication: Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.

Cytophaga hutchinsonii ATCC 33406

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008255
Total Bases: 4433218 bp
Number of genes: 3837
Released: Jul 11, 2006.
Modified: Jul 25, 2006.
Primary publication:

Dechloromonas aromatica RCB

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007298
Total Bases: 4501104 bp
Number of genes: 4283
Released: Aug 5, 2005.
Modified: Apr 4, 2006.
Primary publication: Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas.

Dehalococcoides ethenogenes 195

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002936
Total Bases: 1469720 bp
Number of genes: 1642
Released: Jan 7, 2005.
Modified: Apr 3, 2006.
Primary publication: Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.

Dehalococcoides sp. CBDB1

Sequenced by: Max Planck Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007356
Total Bases: 1395502 bp
Number of genes: 1510
Released: Aug 19, 2005.
Modified: Dec 3, 2005.
Primary publication-1: Bacterial dehalorespiration with chlorinated benzenes.
Primary publication-2: Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium.

Deinococcus geothermalis DSM 11300

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008025
Total Bases: 2467205 bp
Number of genes: 2411
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008010
Total Bases: 574127 bp
Number of genes: 530
Released: May 4, 2006.
Modified: May 9, 2006.
Primary publication: None

Deinococcus radiodurans R1

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001263
Total Bases: 2648638 bp
Number of genes: 2687
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001264
Total Bases: 412348 bp
Number of genes: 369
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000958
Total Bases: 177466 bp
Number of genes: 148
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000959
Total Bases: 45704 bp
Number of genes: 40
Released: Nov 24, 1999.
Modified: Jun 6, 2007.
Primary publication-1: Engineering Deinococcus radiodurans for metal remediation in radioactive mixed waste environments.
Primary publication-2: Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.
Primary publication-3: Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.

Desulfitobacterium hafniense Y51

Sequenced by: Research Institute of Innovative
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007907
Total Bases: 5727534 bp
Number of genes: 5137
Released: Mar 9, 2006.
Modified: Apr 3, 2006.
Primary publication: Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195.

Desulfotalea psychrophila LSv54

Sequenced by: e.gene Biotechnologie GmbH
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006138
Total Bases: 3523383 bp
Number of genes: 3204
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006139
Total Bases: 121587 bp
Number of genes: 101
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006140
Total Bases: bp
Number of genes:
Released: Aug 13, 2004.
Modified: Jun 29, 2007.
Primary publication: The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments.

Desulfotomaculum reducens MI-1

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009253
Total Bases: 3608104 bp
Number of genes: 3423
Released: Mar 24, 2007.
Modified: Mar 31, 2007.
Primary publication: None

Desulfovibrio desulfuricans G20

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007519
Total Bases: 3730232 bp
Number of genes: 3865
Released: Oct 28, 2005.
Modified: Apr 4, 2006.
Primary publication: None

Desulfovibrio vulgaris subsp. vulgaris DP4

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008741
Total Bases: 198504 bp
Number of genes: 150
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008751
Total Bases: bp
Number of genes:
Released: Jan 3, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002937
Total Bases: 3570858 bp
Number of genes: 3480
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005863
Total Bases: 202301 bp
Number of genes: 153
Released: Apr 13, 2004.
Modified: Jun 19, 200.
Primary publication: The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Dichelobacter nodosus VCS1703A

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009446
Total Bases: 1389350 bp
Number of genes: 1351
Released: May 4, 2007.
Modified: Jun 25, 2007.
Primary publication: Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.

Ehrlichia canis str. Jake

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007354
Total Bases: 1315030 bp
Number of genes: 984
Released: Aug 12, 2005.
Modified: Aug 16, 2007.
Primary publication: The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies.

Ehrlichia chaffeensis str. Arkansas

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007799
Total Bases: 1176248 bp
Number of genes: 1158
Released: Feb 21, 2006.
Modified: Mar 30, 2006.
Primary publication: Comparative genomics of emerging human ehrlichiosis agents.

Ehrlichia ruminantium str. Gardel

Sequenced by: CIRAD, France
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006831
Total Bases: 1499920 bp
Number of genes: 989
Released: Feb 4, 2005.
Modified: May 23, 2006.
Primary publication: Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity.

Ehrlichia ruminantium str. Welgevonden

Sequenced by: CIRAD, France
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006832
Total Bases: 1512977 bp
Number of genes: 997
Released: Feb 4, 2005.
Modified: May 22, 2006.
Primary publication: Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity.

Ehrlichia ruminantium Welgevonden

Sequenced by: University of Pretoria, South Africa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005295
Total Bases: 1516355 bp
Number of genes: 961
Released: Feb 4, 2005.
Modified: May 22, 2006.
Primary publication-1: Genome size and genetic map of Cowdria ruminantium
Primary publication-2: The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number.

Enterobacter sp. 638

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009425
Total Bases: 157749 bp
Number of genes: 125
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009436
Total Bases: 4518712 bp
Number of genes: 4260
Released: Apr 18, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Enterococcus faecalis V583

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004668
Total Bases: 3218031 bp
Number of genes: 3258
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004669
Total Bases: 66320 bp
Number of genes: 74
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004671
Total Bases: 57660 bp
Number of genes: 62
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004670
Total Bases: 17963 bp
Number of genes: 19
Released: Mar 29, 2003.
Modified: Dec 2, 2005.
Primary publication: Modulation of virulence within a pathogenicity island in vancomycin-resistant Enterococcus faecalis.

Erwinia carotovora subsp. atroseptica SCRI1043

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004547
Total Bases: 5064019 bp
Number of genes: 4614
Released: Jul 21, 2004.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.

Erythrobacter litoralis HTCC2594

Sequenced by: The Gordon and Betty Moore Foundation Marine Microbiology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007722
Total Bases: 3052398 bp
Number of genes: 3056
Released: Jan 11, 2006.
Modified: Mar 30, 2006.
Primary publication: Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov.

Escherichia coli 536

Sequenced by: University of Goettingen
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008253
Total Bases: 4938920 bp
Number of genes: 4789
Released: Jul 13, 2006.
Modified: Aug 16, 2007.
Primary publication-1: Genetic structure and distribution of four pathogenicity islands (PAI I(536) to PAI IV(536)) of uropathogenic Escherichia coli strain 536.
Primary publication-2: Instability of pathogenicity islands in uropathogenic Escherichia coli 536.
Primary publication-3: The pathogenicity island-associated K15 capsule determinant exhibits a novel genetic structure and correlates with virulence in uropathogenic Escherichia coli strain 536.

Escherichia coli APEC O1

Sequenced by: Iowa State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008563
Total Bases: 5082025 bp
Number of genes: 4561
Released: Oct 4, 2006.
Modified: Apr 9, 2007.
Primary publication: None

Escherichia coli CFT073

Sequenced by: Univ. Wisconsin
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004431
Total Bases: 5231428 bp
Number of genes: 5589
Released: Dec 10, 2002.
Modified: Apr 4, 2006.
Primary publication: Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

Escherichia coli K12

Sequenced by: Univ. Wisconsin
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000913
Total Bases: 4639675 bp
Number of genes: 4488
Released: Sep 5, 1997.
Modified: May 1, 2007.
Primary publication-1: The complete genome sequence of Escherichia coli K-12.
Primary publication-2: Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Escherichia coli O157:H7 EDL933

Sequenced by: Univ. Wisconsin
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002655
Total Bases: 5528445 bp
Number of genes: 5453
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007414
Total Bases: 92077 bp
Number of genes: 101
Released: Feb 24, 2001.
Modified: Jul 19, 2006.
Primary publication: Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Escherichia coli O157:H7 str. Sakai

Sequenced by: GIRC
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002695
Total Bases: 5498450 bp
Number of genes: 5395
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002128
Total Bases: 92721 bp
Number of genes: 85
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002127
Total Bases: 3306 bp
Number of genes: 3
Released: Mar 29, 2000.
Modified: Mar 30, 2007.
Primary publication-1: Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.
Primary publication-2: Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak.
Primary publication-3: Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak.
Primary publication-4: Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655.

Escherichia coli UTI89

Sequenced by: Washington University (WashU)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007946
Total Bases: 5065741 bp
Number of genes: 5176
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007941
Total Bases: 114230 bp
Number of genes: 145
Released: Apr 5, 2006.
Modified: Mar 12, 2007.
Primary publication: Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.

Escherichia coli W3110

Sequenced by: Nara Institute of Science and Technology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: AC_000091
Total Bases: 4646332 bp
Number of genes: 4444
Released: Jan 23, 2006.
Modified: Aug 16, 2007.
Primary publication: Nucleotide sequence of the operator-promoter region of the galactose operon of Escherichia coli.

Fervidobacterium nodosum Rt17-B1

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009718
Total Bases: 1948941 bp
Number of genes: 1847
Released: Jul 30, 2007.
Modified: Aug 1, 2007.
Primary publication: None

Flavobacterium johnsoniae UW101 ATCC 17061

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009441
Total Bases: 6096872 bp
Number of genes: 5137
Released: May 1, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Flavobacterium psychrophilum JIP02/86

Sequenced by: I.N.R.A., FRANCE
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009613
Total Bases: 2861988 bp
Number of genes: 2499
Released: Jun 25, 2007.
Modified: Jun 29, 2007.
Primary publication: Complete genome sequence of the fish pathogen Flavobacterium psychrophilum.

Francisella tularensis subsp. tularensis FSC 198

Sequenced by: University of Birmingham
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008245
Total Bases: 1892616 bp
Number of genes: 1852
Released: Jul 12, 2006.
Modified: Aug 14, 2007.
Primary publication: Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4.

Francisella tularensis subsp. holarctica

Sequenced by: LLNL
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007880
Total Bases: 1895994 bp
Number of genes: 2019
Released: Mar 2, 2006.
Modified: Jun 28, 2007.
Primary publication: Efficacy of the live attenuated Francisella tularensis vaccine (LVS) in a murine model of disease.

Francisella tularensis subsp. holarctica OSU18

Sequenced by: Baylor College of Medicine
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008369
Total Bases: 1895727 bp
Number of genes: 1932
Released: Sep 20, 2006.
Modified: Sep 25, 2006.
Primary publication: Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence.

Francisella tularensis subsp. novicida U112

Sequenced by: University of Washington
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008601
Total Bases: 1910031 bp
Number of genes: 1781
Released: Nov 28, 2006.
Modified: Aug 8, 2007.
Primary publication: Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.

Francisella tularensis subsp. tularensis Schu S4

Sequenced by: Swedish Defence Research
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006570
Total Bases: 1892819 bp
Number of genes: 1852
Released: Dec 17, 2004.
Modified: Jun 28, 2007.
Primary publication: Preliminary analysis and annotation of the partial genome sequence of Francisella tularensis strain Schu 4.

Francisella tularensis subsp. tularensis WY96-3418

Sequenced by: BioHealthBase
Sequenced by: Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009257
Total Bases: 1898476 bp
Number of genes: 1872
Released: Mar 24, 2007.
Modified: Mar 31, 2007.
Primary publication: None

Frankia alni ACN14a

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008278
Total Bases: 7497934 bp
Number of genes: 6786
Released: Aug 3, 2006.
Modified: Sep 13, 2006.
Primary publication: Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.

Frankia sp. CcI3

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007777
Total Bases: 5433628 bp
Number of genes: 4618
Released: Feb 6, 2006.
Modified: Feb 26, 2007.
Primary publication: Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.

Fusobacterium nucleatum subsp. nucleatum ATCC 25586

Sequenced by: Integrated Genomics
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003454
Total Bases: 2174500 bp
Number of genes: 2129
Released: Mar 13, 2002.
Modified: Dec 2, 2005.
Primary publication: Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.

Geobacillus kaustophilus HTA426

Sequenced by: JAMSTEC
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006510
Total Bases: 3544776 bp
Number of genes: 3612
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006509
Total Bases: 47890 bp
Number of genes: 42
Released: Dec 4, 2004.
Modified: Jan 18, 2006.
Primary publication: Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench.

Geobacillus thermodenitrificans NG80-2

Sequenced by: TEDA School of Biological Sciences and Biotechnology, Nankai University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009328
Total Bases: 3550319 bp
Number of genes: 3535
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009329
Total Bases: 57693 bp
Number of genes: 55
Released: Mar 29, 2007.
Modified: Apr 6, 2007.
Primary publication: Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir.

Geobacter metallireducens GS-15

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007517
Total Bases: 3997420 bp
Number of genes: 3621
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007515
Total Bases: 13762 bp
Number of genes: 13
Released: Oct 27, 2005.
Modified: Mar 30, 2007.
Primary publication: Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis.

Geobacter sulfurreducens PCA

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002939
Total Bases: 3814139 bp
Number of genes: 3528
Released: Dec 13, 2003.
Modified: Jan 18, 2006.
Primary publication: Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.

Geobacter uraniumreducens Rf4

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009483
Total Bases: 5136364 bp
Number of genes: 4489
Released: May 11, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Gloeobacter violaceus PCC 7421

Sequenced by: Kazusa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_051250
Total Bases: 4659019 bp
Number of genes: 4482
Released: Nov 19, 2003.
Modified: Dec 3, 2005.
Primary publication-1: Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids.
Primary publication-2: Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids (supplement).

Gluconobacter oxydans 621H

Sequenced by: Gottingen Genom. Lab.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006677
Total Bases: 2702173 bp
Number of genes: 2499
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006672
Total Bases: 163186 bp
Number of genes: 163
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006673
Total Bases: 26568 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006674
Total Bases: 14547 bp
Number of genes: 18
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006675
Total Bases: 13223 bp
Number of genes: 18
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006676
Total Bases: 2687 bp
Number of genes: 4
Released: Jan 24, 2005.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans.

Granulibacter bethesdensis CGDNIH1

Sequenced by: Rocky Mountain Laboratories, National Institutes of Allergy and Infectious Disease, The National Institutes of Health
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008343
Total Bases: 2708355 bp
Number of genes: 2498
Released: Sep 13, 2006.
Modified: Apr 4, 2007.
Primary publication: A novel bacterium associated with lymphadenitis in a patient with chronic granulomatous disease.

Haemophilus ducreyi 35000HP

Sequenced by: University Ohio
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002940
Total Bases: 1698955 bp
Number of genes: 1838
Released: Jul 23, 2003.
Modified: Apr 3, 2006.
Primary publication: None

Haemophilus influenzae 86-028NP

Sequenced by: Columbus Children's Research Institute and The Ohio State University, Pediatrics, USA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007146
Total Bases: 1913428 bp
Number of genes: 1898
Released: Apr 23, 2004.
Modified: Jan 18, 2006.
Primary publication: Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20.

Haemophilus influenzae Rd KW20

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000907
Total Bases: 1830138 bp
Number of genes: 1788
Released: Jul 28, 1995.
Modified: Aug 14, 2007.
Primary publication: Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Haemophilus somnus 129PT

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008309
Total Bases: 2007700 bp
Number of genes: 1867
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006298
Total Bases: 5178 bp
Number of genes: 6
Released: Aug 22, 2006.
Modified: Aug 16, 2007.
Primary publication: Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd.

Hahella chejuensis KCTC 2396

Sequenced by: Korea Research Institute of Bioscience and Biotechnology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007645
Total Bases: 7215267 bp
Number of genes: 6863
Released: Dec 14, 2005.
Modified: Mar 30, 2006.
Primary publication: Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent.

Haloarcula marismortui ATCC 43049

Sequenced by: Institute for Systems Biology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006396
Total Bases: 3131724 bp
Number of genes: 3186
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006397
Total Bases: 288050 bp
Number of genes: 285
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006389
Total Bases: 33303 bp
Number of genes: 36
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006390
Total Bases: 33452 bp
Number of genes: 42
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006391
Total Bases: 39521 bp
Number of genes: 40
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006392
Total Bases: 50060 bp
Number of genes: 51
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006393
Total Bases: 132678 bp
Number of genes: 131
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006394
Total Bases: 155300 bp
Number of genes: 167
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006395
Total Bases: 155300 bp
Number of genes: 9
Released: Nov 3, 2004.
Modified: Jan 18, 2006.
Primary publication: Low-pass sequencing for microbial comparative genomics.

Halobacterium sp. NRC-1

Sequenced by: University of Massachusetts-Amherst, University of Washington
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002607
Total Bases: 2014239 bp
Number of genes: 2127
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002608
Total Bases: 365425 bp
Number of genes: 371
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001869
Total Bases: 191346 bp
Number of genes: 176
Publications: 10 Publications
Released: Oct 1, 2000.
Modified: Jan 26, 2007.
Primary publication: Genome sequence of Halobacterium species NRC-1.

Haloquadratum walsbyi DSM 16790

Sequenced by: Max Planck Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008212
Total Bases: 3132494 bp
Number of genes: 2875
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008213
Total Bases: 46867 bp
Number of genes: 39
Released: Jun 22, 2006.
Modified: Aug 24, 2006.
Primary publication-1: The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity.
Primary publication-2: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16820057&dopt=Abstract
Primary publication-3: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16332346&dopt=Abstract
Primary publication-4: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=15560825&dopt=Abstract

Halorhodospira halophila SL1

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008789
Total Bases: 2678452 bp
Number of genes: 2493
Released: Jan 10, 2007.
Modified: Jan 13, 2007.
Primary publication: None

Helicobacter acinonychis str. Sheeba

Sequenced by: Penn State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008229
Total Bases: 1553927 bp
Number of genes: 1654
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008230
Total Bases: 3661 bp
Number of genes: 6
Released: Jun 28, 2006.
Modified: Jan 26, 2007.
Primary publication-1: Helicobacter acinonychis: genetic and rodent infection studies of a Helicobacter pylori-like gastric pathogen of cheetahs and other big cats.
Primary publication-2: Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis.

Helicobacter hepaticus ATCC 51449

Sequenced by: University Wuerzburg
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004917
Total Bases: 1799146 bp
Number of genes: 1915
Released: Jun 18, 2003.
Modified: Dec 2, 2005.
Primary publication: The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus.

Helicobacter pylori 26695

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000915
Total Bases: 1667867 bp
Number of genes: 1630
Released: Aug 7, 1997.
Modified: Jan 17, 2006.
Primary publication: The complete genome sequence of the gastric pathogen Helicobacter pylori.

Helicobacter pylori HPAG1

Sequenced by: Washington University (WashU)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008086
Total Bases: 1596366 bp
Number of genes: 1578
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008087
Total Bases: 9370 bp
Number of genes: 8
Released: Jun 6, 2006.
Modified: Jun 23, 2006.
Primary publication: The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression.

Helicobacter pylori J99

Sequenced by: ASTRA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000921
Total Bases: 1643831 bp
Number of genes: 1495
Released: Jan 29, 1999.
Modified: May 30, 2007.
Primary publication: Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.

Herminiimonas arsenicoxydans

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009138
Total Bases: 3424307 bp
Number of genes: 3391
Released: Mar 16, 2007.
Modified: Mar 26, 2007.
Primary publication: Arsenite oxidation in batch reactors with alginate-immobilized ULPAs1 strain.

Hyperthermus butylicus DSM 5456

Sequenced by: Danish Archaea Centre University of Copenhagen
Sequenced by: NCBI
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008818
Total Bases: 1667163 bp
Number of genes: 1672
Released: Jan 22, 2007.
Modified: Jun 21, 2007.
Primary publication: The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C.

Hyphomonas neptunium ATCC 15444

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008358
Total Bases: 3705021 bp
Number of genes: 3569
Released: Sep 18, 2006.
Modified: Sep 19, 2006.
Primary publication: Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.

Idiomarina loihiensis L2TR

Sequenced by: University of Hawaii at Manoa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006512
Total Bases: 2839318 bp
Number of genes: 2707
Released: Dec 2, 2004.
Modified: Dec 3, 2005.
Primary publication: Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.

Jannaschia sp. CCS1

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007802
Total Bases: 4317977 bp
Number of genes: 4265
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007801
Total Bases: 86072 bp
Number of genes: 71
Released: Feb 27, 2006.
Modified: Mar 30, 2006.
Primary publication: None

Janthinobacterium sp. Marseille

Sequenced by: Information Genomique et Structurale, CNRS UPR2589
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009659
Total Bases: 4110251 bp
Number of genes: 3750
Released: Jul 6, 2007.
Modified: Jul 25, 2007.
Primary publication: None

Kineococcus radiotolerans SRS30216

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009660
Total Bases: 12917 bp
Number of genes: 17
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009664
Total Bases: 4761183 bp
Number of genes: 4576
Released: Jul 10, 2007.
Modified: Jul 25, 2007.
Primary publication: Kineococcus radiotolerans sp. nov., a radiation-resistant, gram-positive bacterium.

Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Sequenced by: The Klebsiella pneumonia Genome Sequencing Project
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009648
Total Bases: 5315120 bp
Number of genes: 4894
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009649
Total Bases: 175879 bp
Number of genes: 180
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009650
Total Bases: 107576 bp
Number of genes: 124
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009651
Total Bases: 88582 bp
Number of genes: 98
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009652
Total Bases: 4259 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009653
Total Bases: 3478 bp
Number of genes: 5
Released: Jul 5, 2007.
Modified: Jul 25, 2007.
Primary publication: None

Lactobacillus acidophilus NCFM

Sequenced by: Cal Poly. San Luis Obispo
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006814
Total Bases: 1993564 bp
Number of genes:
Released: Jan 31, 2005.
Modified: Feb 2, 2007.
Primary publication: Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM.

Lactobacillus brevis ATCC 367

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008497
Total Bases: 2291220 bp
Number of genes: 2314
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008498
Total Bases: 13413 bp
Number of genes: 12
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008499
Total Bases: 35595 bp
Number of genes: 25
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactobacillus casei ATCC 334

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008526
Total Bases: 2895264 bp
Number of genes: 2909
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008502
Total Bases: 29061 bp
Number of genes: 20
Released: Oct 13, 2006.
Modified: Aug 14, 2007.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008054
Total Bases: 1864998 bp
Number of genes: 2217
Released: May 26, 2006.
Modified: June 13, 2006.
Primary publication: The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution.

Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008529
Total Bases: 1856951 bp
Number of genes: 2040
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactobacillus gasseri ATCC 33323

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008530
Total Bases: 1894360 bp
Number of genes: 1898
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: omparative genomics of the lactic acid bacteria.

Lactobacillus johnsonii NCC 533

Sequenced by: Nestle Research Center, Switzerland
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005362
Total Bases: bp
Number of genes:
Released: Feb 18, 2004.
Modified: Jan 26, 2007.
Primary publication: The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533.

Lactobacillus plantarum WCFS1

Sequenced by: Wageningen Centre for Food Sciences
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004567
Total Bases: 3308274 bp
Number of genes: 3136
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006375
Total Bases: 1917 bp
Number of genes: 3
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006376
Total Bases: 2365 bp
Number of genes: 4
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006377
Total Bases: 36069 bp
Number of genes: 43
Released: Feb 5, 2003.
Modified: Jun 21, 2007.
Primary publication: Complete genome sequence of Lactobacillus plantarum WCFS1.

Lactobacillus reuteri F275

Sequenced by: US DOE Joint Genome Institute
Sequenced by: University of Otago New Zeland
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009513
Total Bases: 1999618 bp
Number of genes: 2027
Released: Jun 1, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Lactobacillus sakei subsp. sakei 23K

Sequenced by: Institut National de la Recherche Agronomique (INRA)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007576
Total Bases: 1884661 bp
Number of genes: 1963
Released: Nov 2, 2005.
Modified: Aug 16, 2007.
Primary publication: The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K.

Lactobacillus salivarius subsp. salivarius UCC118

Sequenced by: University College Cork
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007929
Total Bases: 1827111 bp
Number of genes: 1864
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006529
Total Bases: 20417 bp
Number of genes: 27
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006530
Total Bases: 44013 bp
Number of genes: 51
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007930
Total Bases: 242436 bp
Number of genes: 242
Released: Mar 30, 2006.
Modified: May 3, 2006.
Primary publication: Multireplicon genome architecture of Lactobacillus salivarius.

Lactococcus lactis subsp. cremoris MG1363

Sequenced by: Bielefeld University
Sequenced by: National Center for Biotechnology Information, NIH, USA, Bethesda
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009004
Total Bases: 2529478 bp
Number of genes: 2597
Released: Feb 6, 2007.
Modified: Aug 9, 2007.
Primary publication: Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363.

Lactococcus lactis subsp. cremoris SK11

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008527
Total Bases: 2438589 bp
Number of genes: 2610
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008503
Total Bases: 14041 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008504
Total Bases: 9554 bp
Number of genes: 8
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008505
Total Bases: 74750 bp
Number of genes: 65
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008506
Total Bases: 47208 bp
Number of genes: 39
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008507
Total Bases: 14206 bp
Number of genes: 8
Released: Oct 13, 2006.
Modified: Feb 14, 2007.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactococcus lactis subsp. lactis Il1403

Sequenced by: INRA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002662
Total Bases: 2365589 bp
Number of genes: 2425
Released: May 5, 2001.
Modified: Jun 7, 2007.
Primary publication: Low-redundancy sequencing of the entire Lactococcus lactis IL1403 genome.

Lawsonia intracellularis PHE/MN1-00

Sequenced by: University Minnesota
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008011
Total Bases: 1457619 bp
Number of genes: 1187
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008012
Total Bases: 27048 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008013
Total Bases: 39794 bp
Number of genes: 24
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008014
Total Bases: 194553 bp
Number of genes: 104
Released: May 5, 2006.
Modified: Mar 14, 2007.
Primary publication: None

Legionella pneumophila str. Corby

Sequenced by: FLI Genome Analysis
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009494
Total Bases: 3576470 bp
Number of genes: 3259
Released: May 24, 2007.
Modified: Aug 14, 2007.
Primary publication: None

Legionella pneumophila str. Lens

Sequenced by: Institut Pasteur
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006369
Total Bases: 3345687 bp
Number of genes: 3001
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006366
Total Bases: 59832 bp
Number of genes: 57
Released: Oct 7, 2004.
Modified: Dec 3, 2005.
Primary publication: Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.

Legionella pneumophila str. Paris

Sequenced by: Institut Pasteur
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006368
Total Bases: 3503610 bp
Number of genes: 3136
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006365
Total Bases: 131885 bp
Number of genes: 142
Released: Oct 7, 2004.
Modified: Dec 3, 2005.
Primary publication: Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.

Legionella pneumophila subsp. pneumophila str. Philadelphia 1

Sequenced by: Columbia Genome Center
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002942
Total Bases: 3397754 bp
Number of genes: 3002
Released: Sep 28, 2004.
Modified: Sep 20, 2006.
Primary publication-1: The genomic sequence of the accidental pathogen Legionella pneumophila.
Primary publication-2: Legionella effectors that promote nonlytic release from protozoa.
Primary publication-3: Multiple substrates of the Legionella pneumophila Dot/Icm system identified by interbacterial protein transfer.
Primary publication-4: Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping.

Leifsonia xyli subsp. xyli str. CTCB07

Sequenced by: Sao Paulo state (Brazil) Consortium
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006087
Total Bases: 2584158 bp
Number of genes: 2376
Released: Aug 13, 2004.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli.

Leptospira borgpetersenii serovar Hardjo-bovis JB197

Sequenced by: Monash University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008510
Total Bases: 3576473 bp
Number of genes: 2980
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008511
Total Bases: 299762 bp
Number of genes: 262
Released: Oct 13, 2006.
Modified: Aug 8, 2007.
Primary publication: Genome reduction in Leptospira borgpetersenii reflects limited transmission potential.

Leptospira borgpetersenii serovar Hardjo-bovis L550

Sequenced by: Monash University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008508
Total Bases: 3614446bp
Number of genes: 3003
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008509
Total Bases: 317336 bp
Number of genes: 270
Released: Oct 13, 2006.
Modified: Jul 2, 2007.
Primary publication: Genome reduction in Leptospira borgpetersenii reflects limited transmission potential.

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

Sequenced by: Sao Paulo state (Brazil) Consortium
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005823
Total Bases: 4277185bp
Number of genes: 3481
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005824
Total Bases: 350181 bp
Number of genes: 272
Released: Mar 19, 2004.
Modified: Apr 3, 2006.
Primary publication: Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.

Leptospira interrogans serovar Lai str. 56601

Sequenced by: Chinese National HGC, Shanghai
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004342
Total Bases: 4332241 bp
Number of genes: 4401
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004343
Total Bases: 358943 bp
Number of genes: 367
Released: Apr 25, 2003.
Modified: Jul 19, 2006.
Primary publication: Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing.

Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008531
Total Bases: 2038396 bp
Number of genes: 2073
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008496
Total Bases: 37367 bp
Number of genes: 35
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Listeria innocua Clip11262

Sequenced by: Institut Pasteur
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003212
Total Bases: 3011208 bp
Number of genes: 3065
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003383
Total Bases: 81905 bp
Number of genes: 80
Released: Oct 27, 2001.
Modified: Dec 3, 2005.
Primary publication: Comparative genomics of Listeria species.
Publication-1: New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays.
Publication-2: Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA.

Listeria monocytogenes EGD-e

Sequenced by: European Consortium
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003210
Total Bases: 2944528 bp
Number of genes: 2940
Released: Oct 27, 2001.
Modified: Dec 2, 2005.
Primary publication: Comparative genomics of Listeria species.
Publication-1: New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays.
Publication-2: Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA.

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002973
Total Bases: 2905187 bp
Number of genes: 2934
Released: Apr 30, 2004.
Modified: Aug 31, 2006.
Primary publication: Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.
Publication: New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays.

Listeria welshimeri serovar 6b str. SLCC5334

Sequenced by: Universitat Giessen
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008555
Total Bases: 2814130 bp
Number of genes: 2864
Released: Oct 27, 2006.
Modified: Oct 31, 2006.
Primary publication: Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.

Magnetococcus sp. MC-1

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008576
Total Bases: 4719581 bp
Number of genes: 3815
Released: Nov 8, 2006.
Modified: Nov 22, 2006.
Primary publication: None

Magnetospirillum magneticum AMB-1

Sequenced by: Tokyo University of Agriculture and Technology, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007626
Total Bases: 4967148 bp
Number of genes: 4563
Released: Dec 1, 2005.
Modified: Jun 29, 2007.
Primary publication: Complete Genome Sequence of the Facultative Anaerobic Magnetotactic Bacterium Magnetospirillum sp. strain AMB-1.

Mannheimia succiniciproducens MBEL55E

Sequenced by: Korea Advanced Institute of Science and Technology, Republic of Korea, Yuseong-gu

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006300
Total Bases: 2314078 bp
Number of genes: 2459
Released: Sep 21, 2004.
Modified: Dec 2, 2005.
Primary publication: The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens.

Maricaulis maris MCS10

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008347
Total Bases: 3368780 bp
Number of genes: 3133
Released: Sep 14, 2006.
Modified: Sep 16, 2006.
Primary publication: None

Marinobacter aquaeolei VT8

Sequenced by: DOE Joint Genome Institute
Sequenced by: Woods Hole Oceanographic Institution
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008738
Total Bases: 239623 bp
Number of genes: 217
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008740
Total Bases: 4326849 bp
Number of genes: 3960
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008739
Total Bases: 213290 bp
Number of genes: 213
Released: Dec 28, 2006.
Modified: Jan 3, 2007.
Primary publication: None

Marinomonas sp. MWYL1

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009654
Total Bases: 5100344 bp
Number of genes: 4598
Released: Jul 5, 2007.
Modified: Jul 25, 2007.
Primary publication: None

Mesoplasma florum L1

Sequenced by: Broad Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006055
Total Bases: 793224 bp
Number of genes: 717
Released: Jul 19, 2004.
Modified: Dec 3, 2005.
Primary publication: None

Mesorhizobium sp. BNC1

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008254
Total Bases: 4412446 bp
Number of genes: 4170
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008242
Total Bases: 343931 bp
Number of genes: 343
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008243
Total Bases: 131247 bp
Number of genes: 122
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008244
Total Bases: 47561 bp
Number of genes: 49
Released: Jul 11, 2006.
Modified: Jul 25, 2006.
Primary publication: None

Mesorhizobium loti MAFF303099

Sequenced by: Kazusa

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002678
Total Bases: 7036071 bp
Number of genes: 6804
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002679
Total Bases: 351911 bp
Number of genes: 320
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002682
Total Bases: 208315 bp
Number of genes: 209
Released: Feb 24, 2001.
Modified: Dec 3, 2005.
Primary publication: Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.

Metallosphaera sedula DSM 5348

Sequenced by: US DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009440
Total Bases: 2191517 bp
Number of genes: 2342
Released: Apr 25, 2007.
Modified: Aug 9, 2007.
Primary publication: None

Methanobrevibacter smithii ATCC 35061

Sequenced by: Washington University Center for Genome Sciences
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009515
Total Bases: 1853160 bp
Number of genes: 1835
Released: Jun 4, 2007.
Modified: Aug 8, 2007.
Primary publication: Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut.

Methanococcus aeolicus Nankai-3

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_009635
Total Bases: 1569500 bp
Number of genes: 1552
Released: Jun 29, 2007.
Modified: Jul 3, 2007.
Primary publication: None

Methanocaldococcus jannaschii DSM 2661

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000909
Total Bases: 1664970 bp
Number of genes: 1772
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001732
Total Bases: 58407 bp
Number of genes: 46
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001733
Total Bases: 16550 bp
Number of genes: 12
Released: Aug 23, 1996.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.

Methanococcoides burtonii DSM 6242

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007955
Total Bases: 2575032 bp
Number of genes: 2497
Released: Apr 10, 2006.
Modified: Apr 13, 2006.
Primary publication: None

Methanococcus maripaludis C5

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009135

Total Bases: 1780761 bp

Number of genes: 1880

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009136

Total Bases: 8285 bp

Number of genes: 9

Released: Mar 15, 2007.

Modified: Mar 24, 2007.

Primary publication: None

Methanococcus maripaludis C7

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009637

Total Bases: 1772694 bp

Number of genes: 1855

Released: Jun 29, 2007.

Modified: Jul 3, 2007.

Primary publication: None

Methanococcus maripaludis S2

Sequenced by: University of Washington

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005791

Total Bases: 1661137 bp

Number of genes: 1772

Released: Oct 7, 2004.

Modified: Jan 18, 2006.

Primary publication: Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.

Methanococcus vannielii SB

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009634

Total Bases: 1720048 bp

Number of genes: 1752

Released: Jun 29, 2007.

Modified: Jul 3, 2007.

Primary publication: None

Methanocorpusculum labreanum Z

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008942

Total Bases: 1804962 bp

Number of genes: 1819

Released: Feb 1, 2007.

Modified: Feb 10, 2007.

Primary publication: None

Methanoculleus marisnigri JR1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009051

Total Bases: 2478101 bp

Number of genes: 2555

Released: Feb 16, 2007.

Modified: Feb 27, 2007.

Primary publication: None

Methanopyrus kandleri AV19

Sequenced by: Fidelity Systems

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003551

Total Bases: 1694969 bp

Number of genes: 1729

Released: Apr 4, 2002.

Modified: Dec 2, 2005.

Primary publication: The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.

Methanosaeta thermophila PT

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008553

Total Bases: 1879471bp

Number of genes: 1781

Released: Oct 25, 2006.

Modified: Oct 28, 2006.

Primary publication: None

Methanosarcina acetivorans C2A

Sequenced by: Broad Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003552

Total Bases: 5751492 bp

Number of genes: 4721

Released: Apr 5, 2002.

Modified: Jan 17, 2006.

Primary publication: The genome of M. acetivorans reveals extensive metabolic and physiological diversity.

Methanosarcina barkeri str. fusaro

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007355

Total Bases: 4837408 bp

Number of genes: 3811

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007355

Total Bases: 4837408 bp

Number of genes: 3811

Released: Aug 12, 2005.

Modified: Aug 16, 2007.

Primary publication: The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes.

Methanosarcina mazei Go1

Sequenced by: Goettingen Genomics Laboratory

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003901

Total Bases: 4096345 bp

Number of genes: 3437

Released: Jul 20, 2002.

Modified: Jun 19, 2007.

Primary publication: The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea.

Methanosphaera stadtmanae DSM 3091

Sequenced by: University of Goettingen

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007681

Total Bases: 1767403 bp

Number of genes: 1588

Released: Jan 5, 2006.

Modified: Mar 30, 2006.

Primary publication: The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis.

Methanospirillum hungatei JF-1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007796

Total Bases: 3544738 bp

Number of genes: 3304

Released: Feb 17, 2006.

Modified: Mar 30, 2006.

Primary publication: None

Methanothermobacter thermautotrophicus str. Delta H

Sequenced by: Genome Therapeutics Corporation

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000916

Total Bases: 1751377 bp

Number of genes: 1920

Released: Nov 26, 1997.

Modified: Jun 20, 2007.

Primary publication: Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Methylibium petroleiphilum PM1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008825

Total Bases: 4044195 bp

Number of genes: 3873

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008826

Total Bases: 599444 bp

Number of genes: 673

Released: Jan 29, 2007.

Modified: Feb 27, 2007.

Primary publication: Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1.

Methylobacillus flagellatus KT

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007947

Total Bases: 2971517 bp

Number of genes: 2822

Released: Apr 10, 2006.

Modified: May 3, 2007.

Primary publication: Genome of Methylobacillus flagellatus, molecular basis for obligate methylotrophy, and polyphyletic origin of methylotrophy.

Methylococcus capsulatus str. Bath

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002977

Total Bases: 3304561 bp

Number of genes: 3056

Released: Sep 24, 2004.

Modified: Mar 12, 2007.

Primary publication: Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).

Moorella thermoacetica ATCC 39073

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007644

Total Bases: 2628784 bp

Number of genes: 2615

Released: Dec 12, 2005.

Modified: May 24, 2007.

Primary publication: None

Mycobacterium avium 104

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008595

Total Bases: 5475491 bp

Number of genes: 5313

Released: Nov 20, 2006.

Modified: Nov 29, 2006.

Primary publication: None

Mycobacterium avium subsp. paratuberculosis K-10

Sequenced by: Univ. Minnesota

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002944

Total Bases: 4829781 bp

Number of genes: 4398

Released: Jan 30, 2004.

Modified: Jun 20, 2007.

Primary publication: The complete genome sequence of Mycobacterium avium subspecies paratuberculosis.

Mycobacterium bovis AF2122/97

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002945

Total Bases: 4345492 bp

Number of genes: 4003

Released: Jun 6, 2003.

Modified: Jun 7, 2006.

Primary publication: The complete genome sequence of Mycobacterium bovis.

Mycobacterium bovis BCG str. Pasteur 1173P2 BCG Pasteur 1173P2

Sequenced by: Sanger Institute

Sequenced by: NCBI

Sequenced by: Bioinformatics at Fiocruz - FAP

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008769

Total Bases: 4374522 bp

Number of genes: 4036

Released: Jan 8, 2007.

Modified: Apr 3, 2007.

Primary publication: Genome plasticity of BCG and impact on vaccine efficacy.

Mycobacterium gilvum PYR-GCK

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009338

Total Bases: bp

Number of genes: 5323

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009339

Total Bases: 321253 bp

Number of genes: 302

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009340

Total Bases: 25309 bp

Number of genes: 24

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009341

Total Bases: 16660 bp

Number of genes: 16

Released: Apr 13, 2007.

Modified: Apr 17, 2007.

Primary publication: None

Mycobacterium sp. JLS

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009077

Total Bases: 6048425 bp

Number of genes: 5845

Released: Feb 27, 2007.

Modified: Mar 1, 2007.

Primary publication: Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil.

Mycobacterium sp. KMS

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008703

Total Bases: 302089 bp

Number of genes: 293

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008705

Total Bases: 5737227 bp

Number of genes: 5551

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008704

Total Bases: 216763 bp

Number of genes: 235

Released: Dec 20, 2006.

Modified: Dec 22, 2006.

Primary publication: Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil.

Mycobacterium leprae TN

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002677

Total Bases: 3268203 bp

Number of genes: 2770

Released: Mar 10, 2001.

Modified: Dec 3, 2005.

Primary publication: Massive gene decay in the leprosy bacillus.

Mycobacterium sp. MCS

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008146

Total Bases: 5705448 bp

Number of genes: 5473

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008147

Total Bases: 215075 bp

Number of genes: 225

Released: Jun 9, 2006.

Modified: Jun 13, 2006.

Primary publication: Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil.

Mycobacterium sp. MCS

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008146

Total Bases: 5705448 bp

Number of genes: 5473

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008147

Total Bases: 215075 bp

Number of genes: 225

Released: Jun 9, 2006.

Modified: Jun 13, 2006.

Primary publication: Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil.

Mycobacterium tuberculosis CDC1551

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002755

Total Bases: 4403837 bp

Number of genes: 4293

Released: Sep 10, 2002.

Modified: Jan 17, 2006.

Primary publication: Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.

Mycobacterium tuberculosis F11

Sequenced by: The Broad Institute Genome Sequencing Platform

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009565

Total Bases: 4424435 bp

Number of genes: 3998

Released: Jun 7, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Mycobacterium tuberculosis H37Ra ATCC25177

Sequenced by: Chinese National Human Genome Center at Shanghai

Sequenced by: Beijing Genomics Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009525

Total Bases: 4419977 bp

Number of genes: 4084

Released: May 31, 2007.

Modified: Jun 27, 2007.

Primary publication: None

Mycobacterium tuberculosis H37Rv

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000962

Total Bases: 4411532 bp

Number of genes: 4048

Released: Jun 20, 1998.

Modified: May 24, 2007.

Primary publication-1: Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Primary publication-2: Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv.

Mycobacterium ulcerans Agy99

Sequenced by: Institut Pasteur

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008611

Total Bases: 5631606 bp

Number of genes: 4981

Released: Dec 1, 2006.

Modified: Feb 2, 2007.

Primary publication: Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer.

Mycobacterium vanbaalenii PYR-1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008726

Total Bases: 6491865 bp

Number of genes: 6136

Released: Dec 27, 2006.

Modified: Dec 29, 2006.

Primary publication: None

Mycoplasma agalactiae PG2

Sequenced by: Genoscope

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009497

Total Bases: 877438 bp

Number of genes: 792

Released: May 24, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Mycoplasma capricolum subsp. capricolum ATCC 27343

Sequenced by: J. Craig Venter Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007633

Total Bases: 1010023 bp

Number of genes: 867

Released: Dec 6, 2005.

Modified: Mar 30, 2006.

Primary publication: None

Mycoplasma gallisepticum R

Sequenced by: Univ. Connecticut

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004829

Total Bases: 996422 bp

Number of genes: 781

Released: Sep 2, 2003.

Modified: Dec 2, 2005.

Primary publication: The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low).

Mycoplasma genitalium G37

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000908

Total Bases: 580076 bp

Number of genes: 525

Released: Oct 20, 1995.

Modified: Aug 9, 2007.

Primary publication-1: The minimal gene complement of Mycoplasma genitalium.

Primary publication-2: A survey of the Mycoplasma genitalium genome by using random sequencing.

Primary publication-3: Characterization of repetitive DNA in the Mycoplasma genitalium genome: possible role in the generation of antigenic variation.

Mycoplasma hyopneumoniae 232

Sequenced by: Iowa State University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006360

Total Bases: bp

Number of genes:

Released: Oct 19, 2004.

Modified: Jan 9, 2006.

Primary publication: he genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis.

Mycoplasma hyopneumoniae 7448

Sequenced by: LNCC - Laboratorio Nacional de

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007332

Total Bases: 920079 bp

Number of genes: 711

Released: Aug 8, 2005.

Modified: Dec 3, 2005.

Primary publication: Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.

Mycoplasma hyopneumoniae J

Sequenced by: LNCC - Laboratorio Nacional de Computacao Cientifica

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007295

Total Bases: 897405 bp

Number of genes: 709

Released: Aug 5, 2005.

Modified: Dec 3, 2005.

Primary publication: Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.

Mycoplasma mobile 163K

Sequenced by: Broad Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006908

Total Bases: 777079 bp

Number of genes: 667

Released: Aug 4, 2004.

Modified: Aug 3, 2006.

Primary publication: The complete genome and proteome of Mycoplasma mobile.

Mycoplasma mycoides subsp. mycoides SC str. PG1

Sequenced by: Royal Institute of Technology, Stockholm, Sweden

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005364

Total Bases: 1211703 bp

Number of genes: 1052

Released: Feb 6, 2004.

Modified: Mar 9, 2007.

Primary publication: The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP).

Mycoplasma penetrans HF-2

Sequenced by: NIID Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004432

Total Bases: 1358633 bp

Number of genes: 1069

Released: Dec 6, 2002.

Modified: Jun 7, 2006.

Primary publication: The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans.

Mycoplasma pneumoniae M129

Sequenced by: Heidelberg University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000912

Total Bases: 816394 bp

Number of genes: 733

Released: Nov 15, 1996.

Modified: Jan 18, 2006.

Primary publication-1: Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae.

Primary publication-2: Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

Mycoplasma pulmonis UAB CTIP

Sequenced by: Genoscope

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002771

Total Bases: 963879 bp

Number of genes: 814

Released: May 23, 2001.

Modified: Jun 20, 2007.

Primary publication: The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis.

Mycoplasma synoviae 53

Sequenced by: LNCC - Laboratorio Nacional de Computacao Cientifica

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007294

Total Bases: 799476 bp

Number of genes: 728

Released: Aug 5, 2005.

Modified: Mar 30, 2006.

Primary publication: Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.

Myxococcus xanthus DK 1622

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008095

Total Bases: 9139763 bp

Number of genes: 7456

Released: Jun 7, 2006.

Modified: Jan 26, 2007.

Primary publication: Evolution of sensory complexity recorded in a myxobacterial genome.

Nanoarchaeum equitans Kin4-M

Sequenced by: DIVERSA

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005213

Total Bases: 490885 bp

Number of genes: 582

Released: Oct 21, 2003.

Modified: Dec 2, 2005.

Primary publication: The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism.

Natronomonas pharaonis DSM 2160

Sequenced by: Max Planck Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007426

Total Bases: 2595221 bp

Number of genes: 2726

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007427

Total Bases: 130989 bp

Number of genes: 132

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007428

Total Bases: 23486 bp

Number of genes: 36

Released: Sep 28, 2005.

Modified: Jan 18, 2006.

Primary publication: Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis.

Neisseria gonorrhoeae FA 1090

Sequenced by: Univ. Oklahoma

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002946

Total Bases: 2153922 bp

Number of genes: 2069

Released: Feb 14, 2005.

Modified: Jan 18, 2006.

Primary publication: None

Neisseria meningitidis FAM18

Sequenced by: Sanger Institute

Sequenced by: NCBI

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008767

Total Bases: 2194961 bp

Number of genes: 2046

Released: Jan 4, 2007.

Modified: Aug 13, 2007.

Primary publication: Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.

Neisseria meningitidis MC58

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003112

Total Bases: 2272360 bp

Number of genes: 2225

Released: Mar 10, 2000.

Modified: Jun 19, 2007.

Primary publication: Inventory of the proteins in Neisseria meningitidis serogroup B strain MC58.

Neisseria meningitidis Z2491

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003116

Total Bases: 2184406 bp

Number of genes: 2193

Released: Apr 13, 2000.

Modified: Jan 24, 2007.

Primary publication: Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491.

Neorickettsia sennetsu str. Miyayama

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007798

Total Bases: 859006 bp

Number of genes: 973

Released: Feb 21, 2006.

Modified: Mar 30, 2006.

Primary publication: Comparative genomics of emerging human ehrlichiosis agents.

Nitratiruptor sp. SB155-2

Sequenced by: Japan Agency for Marine-Earth Science and Technology

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009662

Total Bases: 1877931 bp

Number of genes: 1911

Released: Jul 11, 2007.

Modified: Jul 25, 2007.

Primary publication: Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field.

Nitrobacter hamburgensis X14

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007964

Total Bases: 4406967 bp

Number of genes: 4107

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007959

Total Bases: 294829 bp

Number of genes: 314

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007960

Total Bases: 188318 bp

Number of genes: 185

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007961

Total Bases: 121408 bp

Number of genes: 135

Released: Apr 11, 2006.

Modified: Apr 17, 2006.

Primary publication: None

Nitrobacter winogradskyi Nb-255

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007406

Total Bases: 3402093 bp

Number of genes: 3198

Released: Sep 12, 2005.

Modified: Oct 19, 2006.

Primary publication: Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255.

Nitrosococcus oceani ATCC 19707

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007484

Total Bases: 3481691 bp

Number of genes: 3143

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007483

Total Bases: 40420 bp

Number of genes: 43

Released: Oct 4, 2005.

Modified: Aug 16, 2007.

Primary publication: Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707.

Nitrosomonas europaea ATCC 19718

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004757

Total Bases: 2812094 bp

Number of genes: 2620

Released: Apr 18, 2003.

Modified: Apr 3, 2006.

Primary publication: Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.

Nitrosomonas eutropha C71

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008344

Total Bases: 2661057 bp

Number of genes: 2578

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008341

Total Bases: 65132 bp

Number of genes: 56

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008342

Total Bases: 55635 bp

Number of genes: 53

Released: Sep 13, 2006.

Modified: May 21, 2007.

Primary publication: None

Nitrosospira multiformis ATCC 25196

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007614

Total Bases: 3184243 bp

Number of genes: 2828

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007615

Total Bases: 18871 bp

Number of genes: 17

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007616

Total Bases: 17036 bp

Number of genes: 16

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007617

Total Bases: 14159 bp

Number of genes: 15

Released: Nov 15, 2005.

Modified: Mar 31, 2006.

Primary publication: None

Nocardia farcinica IFM 10152

Sequenced by: Department of Bioactive Molecules, National Institute of Infectious Diseases

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006361

Total Bases: 6021225 bp

Number of genes: 5747

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006362

Total Bases: 184026 bp

Number of genes: 160

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006363

Total Bases: 87093 bp

Number of genes: 93

Released: Oct 7, 2004.

Modified: Dec 3, 2005.

Primary publication: The complete genomic sequence of Nocardia farcinica IFM 10152.

Nocardioides sp. JS614

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008699

Total Bases: 4985871 bp

Number of genes: 4755

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008697

Total Bases: 307814 bp

Number of genes: 271

Released: Dec 18, 2006.

Modified: Dec 21, 2006.

Primary publication: None

Nostoc sp. PCC 7120

Sequenced by: Kazusa

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003272

Total Bases: 6413771 bp

Number of genes: 5431

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003276

Total Bases: 408101 bp

Number of genes: 386

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003240

Total Bases: 186614 bp

Number of genes: 186

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003267

Total Bases: 101965 bp

Number of genes: 90

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003273

Total Bases: 55414 bp

Number of genes: 85

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003270

Total Bases: 40340 bp

Number of genes: 31

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003241

Total Bases: 5584 bp

Number of genes: 5

Released: Jan 5, 2002.

Modified: Jan 9, 2006.

Primary publication: Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120.

Novosphingobium aromaticivorans DSM 12444

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007794

Total Bases: 3561584 bp

Number of genes: 3412

Released: Feb 10, 2006.

Modified: Mar 30, 2006.

Primary publication: None

Oceanobacillus iheyensis HTE831

Sequenced by: JAMSTEC

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004193

Total Bases: 3630528 bp

Number of genes: 3594

Released: Dec 26, 2001.

Modified: Dec 2, 2005.

Primary publication-1: Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge.

Primary publication-2: Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments.

Ochrobactrum anthropi ATCC 49188

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009667

Total Bases: 2887297 bp

Number of genes: 2803

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009668

Total Bases: 1895911 bp

Number of genes: 1725

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009669

Total Bases: 170351 bp

Number of genes: 180

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009670

Total Bases: 101491 bp

Number of genes: 96

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009671

Total Bases: 93589 bp

Number of genes: 91

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009672

Total Bases: 57138 bp

Number of genes: 37

Released: Jul 12, 2007.

Modified: Jul 25, 2007.

Primary publication: None

Oenococcus oeni PSU-1

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008528

Total Bases: 1780517 bp

Number of genes: 1864

Released: Oct 13, 2006.

Modified: Oct 31, 2006.

Primary publication: Comparative genomics of the lactic acid bacteria.

Onion yellows phytoplasma OY-M

Sequenced by: The University of Tokyo, Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005303

Total Bases: 860631 bp

Number of genes: 793

Released: Dec 9, 2003.

Modified: Dec 3, 2005.

Primary publication: Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma.

Orientia tsutsugamushi Boryong

Sequenced by: Seoul National University College of Medicine

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009488

Total Bases: 2127051 bp

Number of genes: 2216

Released: May 15, 2007.

Modified: Jul 2, 2007.

Primary publication: The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes.

Parabacteroides distasonis ATCC 8503

Sequenced by: Washington University (WashU)

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009615

Total Bases: 4811379 bp

Number of genes: 3965

Released: Jun 27, 2007.

Modified: Jun 29, 2007.

Primary publication: Evolution of Symbiotic Bacteria in the Distal Human Intestine.

Parachlamydia sp UWE25

Sequenced by: University of Vienna, Austria

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005861

Total Bases: 2414465 bp

Number of genes: 2075

Released: Apr 8, 2004.

Modified: Apr 8, 2004.

Primary publication: Illuminating the evolutionary history of chlamydiae.

Paracoccus denitrificans PD1222

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008686

Total Bases: 2852282 bp

Number of genes: 2874

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008687

Total Bases: 1730097 bp

Number of genes: 1683

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008688

Total Bases: 653815 bp

Number of genes: 620

Released: Dec 13, 2006.

Modified: Aug 9, 2007.

Primary publication: None

Parvibaculum lavamentivorans DS-1

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009719

Total Bases: 3914745 bp

Number of genes: 3706

Released: Jul 30, 2007.

Modified: Aug 1, 2007.

Primary publication: 7 publications

Pasteurella multocida subsp. multocida str. Pm70

Sequenced by: Univ. Minnesota

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002663

Total Bases: 2257487 bp

Number of genes: 2092

Released: Mar 15, 2001.

Modified: Dec 3, 2005.

Primary publication: Complete genomic sequence of Pasteurella multocida, Pm70.

Pediococcus pentosaceus ATCC 25745

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008525

Total Bases: 1832387 bp

Number of genes: 1847

Released: Oct 13, 2006.

Modified: Oct 31, 2006.

Primary publication: Comparative genomics of the lactic acid bacteria.

Pelobacter carbinolicus DSM 2380

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007498

Total Bases: 3665893 bp

Number of genes: 3451

Released: Oct 12, 2005.

Modified: May 19, 2007.

Primary publication: None

Pelobacter propionicus DSM 2379

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008609

Total Bases: 4008000 bp

Number of genes: 3685

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008607

Total Bases: 202397 bp

Number of genes: 195

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008608

Total Bases: 30722 bp

Number of genes: 33

Released: Nov 30, 2006.

Modified: Dec 12, 2006.

Primary publication: None

Pelodictyon luteolum DSM 273

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007512

Total Bases: 2364842 bp

Number of genes: 2137

Released: Oct 26, 2005.

Modified: Mar 31, 2006.

Primary publication: None

Pelotomaculum thermopropionicum SI

Sequenced by: Marine Biotechnology Institute Co., Ltd

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009454

Total Bases: 3025375 bp

Number of genes: 2977

Released: May 7, 2007.

Modified: Aug 8, 2007.

Primary publication: Reconstruction and regulation of the central catabolic pathway in the thermophilic propionate-oxidizing syntroph Pelotomaculum thermopropionicum.

Photobacterium profundum SS9

Sequenced by: University of Padova, Italy

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006370

Total Bases: 4085304 bp

Number of genes: 3603

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006371

Total Bases: 2237943 bp

Number of genes: 2030

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005871

Total Bases: 80033 bp

Number of genes: 67

Released: Apr 30, 2004.

Modified: Aug 16, 2007.

Primary publication: Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment.

Photorhabdus luminescens subsp. laumondii TTO1

Sequenced by: Institut Pasteur

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005126

Total Bases: 5688987 bp

Number of genes: 5012

Released: Oct 7, 2003.

Modified: Dec 3, 2005.

Primary publication: The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.

Picrophilus torridus DSM 9790

Sequenced by: Institut of Microbiology and Genetics, University of Goettingen

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005877

Total Bases: 1545895 bp

Number of genes: 1581

Released: Jun 9, 2004.

Modified: Dec 3, 2005.

Primary publication: Genome sequence of Picrophilus torridus and its implications for life around pH 0.

Pirellula sp - Rhodopirellula baltica SH 1

Sequenced by: Max-Plank-Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005027

Total Bases: 7145576 bp

Number of genes: 7405

Released: Jul 2, 2003.

Modified: Jul 2, 2003.

Primary publication: Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.

Polaromonas sp. JS666

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007948

Total Bases: 5200264 bp

Number of genes: 4962

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007949

Total Bases: 360405 bp

Number of genes: 341

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007950

Total Bases: 338007 bp

Number of genes: 323

Released: Apr 10, 2006.

Modified: Apr 13, 2006.

Primary publication: Biodegradation of cis-dichloroethene as the sole carbon source by a beta-proteobacterium.

Polaromonas naphthalenivorans CJ2

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008757

Total Bases: 353291 bp

Number of genes: 317

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008781

Total Bases: 4410291 bp

Number of genes: 4177

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008751

Total Bases: 190172 bp

Number of genes: 171

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008759

Total Bases: 171866 bp

Number of genes: 161

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008760

Total Bases: 143747 bp

Number of genes: 149

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008761

Total Bases: 58808 bp

Number of genes: 53

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008762

Total Bases: 21611 bp

Number of genes: 20

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008763

Total Bases: 9898 bp

Number of genes: 11

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008764

Total Bases: 6459 bp

Number of genes: 5

Released: Jan 4, 2007.

Modified: Jan 11, 2007.

Primary publication: None

Polynucleobacter sp. QLW-P1DMWA-1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009379

Total Bases: 2159490 bp

Number of genes: 2132

Released: Apr 12, 2007.

Modified: Jun 21, 2007.

Primary publication: None

Porphyromonas gingivalis W83

Sequenced by: Porphyromonas gingivalis Genome Project

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002950

Total Bases: 2343476 bp

Number of genes: 2015

Released: Sep 2, 2003.

Modified: Jan 18, 2006.

Primary publication: Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.

Prochlorococcus marinus str. AS9601

Sequenced by: The Gordon and Betty Moore Foundation Marine

Sequenced by: J. Craig Venter Institute

Sequenced by: NCBI

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008816

Total Bases: 1669886 bp

Number of genes: 1984

Released: Jan 19, 2007.

Modified: Jan 22, 200.

Primary publication: None

Prochlorococcus marinus subsp. marinus str. CCMP1375

Sequenced by: CNRS

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005042

Total Bases: 1751080 bp

Number of genes: 1930

Released: Aug 15, 2003.

Modified: Jul 24, 2006.

Primary publication: Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.

Prochlorococcus marinus subsp. pastoris str. CCMP1986

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005072

Total Bases: 1657990 bp

Number of genes: 1763

Released: Aug 15, 2003.

Modified: Jun 15, 2006.

Primary publication: Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.

Prochlorococcus marinus str. MIT 9301

Sequenced by: Gordon and Betty Moore Foundation Marine Microbiology Initiative

Sequenced by: J. Craig Venter Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009091

Total Bases: 1641879 bp

Number of genes: 1963

Released: Mar 5, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Prochlorococcus marinus str. MIT 9303 MIT9303

Sequenced by: The Gordon and Betty Moore Foundation Marine Microbiology Initiative

Sequenced by: J. Craig Venter Institute

Sequenced by: NCBI

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008820

Total Bases: 2682675 bp

Number of genes: 3136

Released: Jan 22, 2007.

Modified: Jan 24, 2007.

Primary publication: None

Prochlorococcus marinus str. MIT 9312

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007577

Total Bases: 1709204 bp

Number of genes: 1856

Released: Nov 2, 2005.

Modified: Jun 16, 2006.

Primary publication: None

Prochlorococcus marinus str. MIT 9313

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005071

Total Bases: 2410873 bp

Number of genes: 2330

Released: Aug 15, 2003.

Modified: Jun 16, 2006.

Primary publication: Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.

Prochlorococcus marinus str. MIT 9515 MIT9515

Sequenced by: Gordon and Betty Moore Foundation Marine Microbiology Initiative

Sequenced by: J. Craig Venter Institute

Sequenced by: NCBI

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008817

Total Bases: 1704176 bp

Number of genes: 1965

Released: Jan 19, 2007.

Modified: Jan 22, 2007.

Primary publication: None

Prochlorococcus marinus str. NATL1A

Sequenced by: Gordon and Betty Moore Foundation Marine Microbiology Initiative

Sequenced by: J. Craig Venter Institute

Sequenced by: NCBI

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_00

Total Bases: 1864731 bp

Number of genes: 2250

Released: Jan 22, 2007.

Modified: Jan 24, 2007.

Primary publication: None

Prochlorococcus marinus str. NATL2A

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007335

Total Bases: 1842899 bp

Number of genes: 1940

Released: Aug 9, 2005.

Modified: Jun 16, 2006.

Primary publication: None

Propionibacterium acnes KPA171202

Sequenced by: Gottingen Genom. Lab.

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006085

Total Bases: 2560265 bp

Number of genes: 2368

Released: Aug 3, 2004.

Modified: Apr 3, 2006.

Primary publication: The complete genome sequence of Propionibacterium acnes, a commensal of human skin.

Prosthecochloris vibrioformis DSM 265

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009337

Total Bases: 1966858 bp

Number of genes: 1824

Released: Apr 12, 2007.

Modified: Aug 14, 2007.

Primary publication: Phylogenetic taxonomy of the family Chlorobiaceae on the basis of 16S rRNA and fmo (Fenna-Matthews-Olson protein) gene sequences.

Pseudoalteromonas atlantica T6c

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008228

Total Bases: 5187005 bp

Number of genes: 4397

Released: Jun 28, 2006.

Modified: Jun 30, 2006.

Primary publication: None

Pseudoalteromonas haloplanktis TAC125

Sequenced by: CNRS

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007481

Total Bases: 3214944 bp

Number of genes: 3075

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007482

Total Bases: 635328 bp

Number of genes: 546

Released: Oct 3, 2005.

Modified: Jan 20, 2006.

Primary publication-1: Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations.

Primary publication-2: Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.

Pseudomonas aeruginosa PAO1

Sequenced by: PathoGenesis Corporation

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002516

Total Bases: 6264404 bp

Number of genes: 5651

Released: Sep 13, 2000.

Modified: Aug 3, 2000.

Primary publication: Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen.

Pseudomonas aeruginosa PA7

Sequenced by: J. Craig Venter Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009656

Total Bases: 6588339 bp

Number of genes: 6369

Released: Jul 5, 2007.

Modified: Jul 25, 2007.

Primary publication: [Exotoxin A production during Pseudomonas aeruginosa PA-7 cultivation in Martin's broth]

Pseudomonas aeruginosa UCBPP-PA14

Sequenced by: Massachusetts General Hospital

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008463

Total Bases: bp

Number of genes:

Released: Oct 6, 2006.

Modified: Oct 13, 2006.

Primary publication: Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial.

Pseudomonas entomophila L48

Sequenced by: Genoscope

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008027

Total Bases: 5888780 bp

Number of genes: 5275

Released: May 10, 2006.

Modified: Jan 27, 2007.

Primary publication: Drosophila host defense after oral infection by an entomopathogenic Pseudomonas species.

Pseudomonas fluorescens Pf-5

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004129

Total Bases: 7074893 bp

Number of genes: 6231

Released: Jun 30, 2005.

Modified: Jun 29, 2007.

Primary publication: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Pseudomonas fluorescens PfO-1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007492

Total Bases: 6438405 bp

Number of genes: 5833

Released: Oct 7, 2005.

Modified: Apr 4, 2006.

Primary publication: None

Pseudomonas mendocina ymp

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009439

Total Bases: 5072807 bp

Number of genes: 4704

Released: Apr 20, 2007.

Modified: Jun 25, 2007.

Primary publication-1: Factors affecting the biodegradation of PCP by Pseudomonas mendocina NSYSU.

Primary publication-2: Pseudomonas mendocina spondylodiscitis: a case report and literature review.

Pseudomonas putida F1

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009512

Total Bases: 5959964 bp

Number of genes: 5405

Released: May 31, 2007.

Modified: Jul 2, 2007.

Primary publication: Characterization of a new solvent-responsive gene locus in Pseudomonas putida F1 and its functionalization as a versatile biosensor.

Pseudomonas putida KT2440

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002947

Total Bases: 6181863 bp

Number of genes: 5516

Released: Jan 22, 2003.

Modified: Aug 17, 2006.

Primary publication: Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

Pseudomonas stutzeri A1501

Sequenced by: The Biotechnology Research Institute,The Chinese Academy of Agricultural

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009434

Total Bases: 4567418 bp

Number of genes: 4210

Released: Apr 20, 2007.

Modified: Jul 3, 2007.

Primary publication: None

Pseudomonas syringae pv. phaseolicola 1448A

Sequenced by: Cornell University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005773

Total Bases: 5928787 bp

Number of genes: 5225

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007274

Total Bases: 131950 bp

Number of genes: 149

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007275

Total Bases: 51711 bp

Number of genes: 60

Released: Aug 1, 2005.

Modified: Jun 22, 2007.

Primary publication: Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.

Pseudomonas syringae pv. syringae B728a

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007005

Total Bases: 6093698bp

Number of genes: 5220

Released: May 12, 2005.

Modified: Aug 17, 2006.

Primary publication: Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000.

Pseudomonas syringae pv. tomato str. DC3000

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004578

Total Bases: 6397126 bp

Number of genes: 5697

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004632

Total Bases: 67473 bp

Number of genes: 77

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004633

Total Bases: 73661 bp

Number of genes: 73

Released: Aug 21, 2003.

Modified: Jun 21, 2007.

Primary publication: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.

Psychrobacter arcticus 273-4

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007204

Total Bases: 2650701 bp

Number of genes: 2211

Released: Jul 20, 2005.

Modified: Jan 18, 2006.

Primary publication: None

Psychrobacter cryohalolentis K5

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007969

Total Bases: 3059876 bp

Number of genes: 2537

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007968

Total Bases: 41221 bp

Number of genes: 44

Released: Apr 18, 2006.

Modified: Apr 20, 2006.

Primary publication: Reproduction and metabolism at - 10 degrees C of bacteria isolated from Siberian permafrost.

Psychrobacter sp. PRwf-1

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009516

Total Bases: 13956 bp

Number of genes: 15

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009517

Total Bases: 2117 bp

Number of genes: 1

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009524

Total Bases: 2978976 bp

Number of genes: 2461

Released: Jun 4, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Psychromonas ingrahamii 37,

Sequenced by: Doe Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008709

Total Bases: 4559598 bp

Number of genes: 3863

Released: Dec 22, 2006.

Modified: Aug 8, 2007.

Primary publication: None

Pyrobaculum aerophilum str. IM2

Sequenced by: UCLA/CalTech

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003364

Total Bases: 2222430 bp

Number of genes: 2706

Released: Jan 17, 2002.

Modified: Jan 29, 2007.

Primary publication: Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.

Pyrobaculum arsenaticum DSM 13514

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009376

Total Bases: 2121076 bp

Number of genes: 2408

Released: Apr 16, 2007.

Modified: Aug 9, 2007.

Primary publication: None

Pyrobaculum calidifontis JCM 11548

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009073

Total Bases: 2009313 bp

Number of genes: 2200

Released: Feb 27, 2007.

Modified: Mar 2, 2007.

Primary publication: None

Pyrobaculum islandicum DSM 4184

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008701

Total Bases: 1826402 bp

Number of genes: 2062

Released: Dec 20, 2007.

Modified: Dec 23, 2007.

Primary publication: None

Pyrococcus abyssi GE5

Sequenced by: Genoscope

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000868

Total Bases: 1765118 bp

Number of genes: 1993

Purine/Keto/Coding Asymmetry Plot

Accession: NC_001773

Total Bases: 3444 bp

Number of genes: 2

Released: Jun 1, 2001.

Modified: Dec 13, 2005.

Primary publication-1: An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.

Primary publication-2: Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.

Primary publication-3: Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea.

Pyrococcus furiosus DSM 3638

Sequenced by: Utah Genome Center

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003413

Total Bases: 1908256 bp

Number of genes: 2228

Released: Aug 3, 1999.

Modified: Jan 26, 2007.

Primary publication-1: Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences.

Primary publication-2: Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology.

Pyrococcus horikoshii OT3

Sequenced by: NITE

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000961

Total Bases: 1738505 bp

Number of genes: 2005

Released: Jul 29, 1998.

Modified: Jun 6, 2007.

Primary publication-1: Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.

Primary publication-2: Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 (supplement).

Ralstonia eutropha H16

Sequenced by: Gottingen Genom. Lab.

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008313

Total Bases: 4052032 bp

Number of genes: 3711

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008314

Total Bases: 2912490 bp

Number of genes: 2568

Released: Aug 30, 2006.

Modified: Jun 27, 2007.

Primary publication: None

Ralstonia eutropha JMP134

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007347

Total Bases: 3806533 bp

Number of genes: 3529

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007348

Total Bases: 2726152bp

Number of genes: 2442

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007336

Total Bases: 634917 bp

Number of genes: 555

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007337

Total Bases: 87688 bp

Number of genes: 90

Released: Aug 10, 2005.

Modified: Dec 19, 2006.

Primary publication: None

Ralstonia metallidurans CH34

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007973

Total Bases: 3928089bp

Number of genes: 3680

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007974

Total Bases: 2580084bp

Number of genes: 2341

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007971

Total Bases: 233720 bp

Number of genes: 241

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007972

Total Bases: 171459 bp

Number of genes: 164

Released: Apr 26, 2006.

Modified: DEc 19, 2006.

Primary publication: None

Ralstonia solanacearum GMI1000

Sequenced by: Genoscope

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003295

Total Bases: 3716413 bp

Number of genes: 3509

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003296

Total Bases: 2094509 bp

Number of genes: 1685

Released: Feb 2, 2002.

Modified: Nov 22, 2006.

Primary publication: Genome sequence of the plant pathogen Ralstonia solanacearum.

Rhizobium etli CFN 42 CFN42

Sequenced by: Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007761

Total Bases: 4381608 bp

Number of genes: 4126

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007762

Total Bases: 194229 bp

Number of genes: 182

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007763

Total Bases: 184338 bp

Number of genes: 165

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007764

Total Bases: 250948 bp

Number of genes: 234

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004041

Total Bases: 371254 bp

Number of genes: 354

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007765

Total Bases: 505334 bp

Number of genes: 459

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007766

Total Bases: 642517 bp

Number of genes: 573

Released: Feb 1, 2006.

Modified: Mar 10, 2006.

Primary publication: The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons.

Rhizobium leguminosarum bv. viciae 3841

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008378

Total Bases: 870021 bp

Number of genes: 789

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008380

Total Bases: 5057142 bp

Number of genes: 4800

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008379

Total Bases: 352782 bp

Number of genes: 313

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008381

Total Bases: 488135 bp

Number of genes: 471

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008382

Total Bases: 151564 bp

Number of genes: 188

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008383

Total Bases: 147463 bp

Number of genes: 142

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008384

Total Bases: 684202 bp

Number of genes: 644

Released: Sep 20, 2006.

Modified: Jun 27 19, 2007.

Primary publication: The genome of Rhizobium leguminosarum has recognizable core and accessory components.

Rhodobacter sphaeroides 2.4.1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007493

Total Bases: 3188609 bp

Number of genes: 3092

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007494

Total Bases: 943016 bp

Number of genes: 865

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007488

Total Bases: 114178 bp

Number of genes: 102

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007489

Total Bases: 105284 bp

Number of genes: 90

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007490

Total Bases: 100828 bp

Number of genes: 98

Released: Oct 7, 2005.

Modified: Apr 20, 2006.

Primary publication: Genome analyses of three strains of Rhodobacter sphaeroides: evidence of rapid evolution of chromosome II.

Rhodobacter sphaeroides ATCC 17025

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009428

Total Bases: 3217726 bp

Number of genes: 3180

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009429

Total Bases: 877879 bp

Number of genes: 849

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009430

Total Bases: 289489 bp

Number of genes: 278

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009431

Total Bases: 121962 bp

Number of genes: 114

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009432

Total Bases: 36198 bp

Number of genes: 32

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009433

Total Bases: 13873 bp

Number of genes: 12

Released: Apr 20, 2007.

Modified: Jun 21, 2007.

Primary publication: Genome analyses of three strains of Rhodobacter sphaeroides: evidence of rapid evolution of chromosome II.

Rhodobacter sphaeroides ATCC 17029

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009040

Total Bases: 122606 bp

Number of genes: 118

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009049

Total Bases: 3147721 bp

Number of genes: 3036

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009050

Total Bases: 1219053 bp

Number of genes: 1099

Released: , 200.

Modified: , 200.

Primary publication: Genome analyses of three strains of Rhodobacter sphaeroides: evidence of rapid evolution of chromosome II.

Rhodococcus sp. RHA1

Sequenced by: University of British Columbia

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008268

Total Bases: 7804765 bp

Number of genes: 7279

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008269

Total Bases: 1123075 bp

Number of genes: 1150

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008270

Total Bases: 442536 bp

Number of genes: 458

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008271

Total Bases: 332361 bp

Number of genes: 334

Released: Jul 28, 2006.

Modified: Jun 27, 2007.

Primary publication: Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1.

Rhodoferax ferrireducens T118

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007908

Total Bases: 4712337 bp

Number of genes: <4304/li>
Purine/Keto/Coding Asymmetry Plot

Accession: NC_007901

Total Bases: 257447 bp

Number of genes: 251

Released: Mar 10, 2006.

Modified: May 18, 2006.

Primary publication: Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III).

Rhodopirellula baltica SH 1

Sequenced by: Max-Plank-Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005027

Total Bases: 7145576 bp

Number of genes: 7404

Released: Jul 2, 2003.

Modified: Nov 22, 2006.

Primary publication: Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.

Rhodopseudomonas palustris BisA53

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008435

Total Bases: 5505494 bp

Number of genes: 4972

Released: Oct 4, 2006.

Modified: Oct 5, 2006.

Primary publication: None

Rhodopseudomonas palustris BisB18

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007925

Total Bases: 5513844 bp

Number of genes: 5016

Released: Mar 21, 2006.

Modified: Mar 30, 2006.

Primary publication: None

Rhodopseudomonas palustris BisB5

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007958

Total Bases: 4892717 bp

Number of genes: 4492

Released: Apr 10, 2006.

Modified: Apr 14, 2006.

Primary publication: None

Rhodopseudomonas palustris CGA009

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005296

Total Bases: 5459213 bp

Number of genes: 4891

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005297

Total Bases: 8427 bp

Number of genes: 7

Released: Jan 6, 2004.

Modified: May 30, 2006.

Primary publication: Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris.

Rhodopseudomonas palustris HaA2

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007778

Total Bases: 5331656 bp

Number of genes: 4772

Released: Feb 6, 2006.

Modified: Mar 30, 2006.

Primary publication: None

Rhodospirillum rubrum ATCC 11170

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007643

Total Bases: 4352825 bp

Number of genes: 3870

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007641

Total Bases: 53732 bp

Number of genes: 50

Released: Dec 12, 2005.

Modified: Apr 3, 2006.

Primary publication: None

Rickettsia bellii RML369-C

Sequenced by: CNRS

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007940

Total Bases: 1522076 bp

Number of genes: 1469

Released: Apr 5, 2006.

Modified: May 30, 2006.

Primary publication: Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens.

Rickettsia conorii str. Malish 7

Sequenced by: CNRS

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003103

Total Bases: 1268755 bp

Number of genes: 1414

Released: Oct 13, 2000.

Modified: Apr 3, 2006.

Primary publication-1: Selfish DNA in protein-coding genes of Rickettsia.

Primary publication-2: Mechanisms of evolution in Rickettsia conorii and R. prowazekii.

Rickettsia felis URRWXCal2

Sequenced by: CNRS

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007109

Total Bases: 1485148 bp

Number of genes: 1439

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007110

Total Bases: 62829 bp

Number of genes: 68

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007111

Total Bases: 39263 bp

Number of genes: 44

Released: Jun 7, 2005.

Modified: Apr 3, 2006.

Primary publication: The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite.

Rickettsia prowazekii str. Madrid E

Sequenced by: Uppsala University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000963

Total Bases: 1111523 bp

Number of genes: 886

Released: Nov 21, 1998.

Modified: Jan 18, 2006.

Primary publication: The genome sequence of Rickettsia prowazekii and the origin of mitochondria.

Rickettsia typhi str. Wilmington

Sequenced by: Human Genome Sequencing Center, Baylor College of Medicine

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006142

Total Bases: 1111496 bp

Number of genes: 919

Released: Aug 20, 2004.

Modified: Apr 3, 2006.

Primary publication: Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.

Roseiflexus sp. RS-1

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009523

Total Bases: 5801598 bp

Number of genes: 4682

Released: Jun 4, 2007.

Modified: Jun 27, 2007.

Primary publication: None

Roseobacter denitrificans OCh 114

Sequenced by: Arizona State University/TGen

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008209

Total Bases: 4133097 bp

Number of genes: 4007

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008386

Total Bases: 106469 bp

Number of genes: 106

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008387

Total Bases: 69269 bp

Number of genes: 56

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008388

Total Bases: 16575 bp

Number of genes: 16

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008389

Total Bases: 5824 bp

Number of genes: 6

Released: Jun 22, 2006.

Modified: Jan 23, 2007.

Primary publication-1: solation of Aerobic Anoxygenic Photosynthetic Bacteria from Black Smoker Plume Waters of the Juan de Fuca Ridge in the Pacific Ocean.

Primary publication-2: Photosynthetic rhizobia

Primary publication-3: Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean.

Primary publication-4: Isolation of tellurite- and selenite-resistant bacteria from hydrothermal vents of the Juan de Fuca Ridge in the Pacific Ocean.

Rubrobacter xylanophilus DSM 9941

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008148

Total Bases: 3225748 bp

Number of genes: 3281

Released: Jun 9, 2006.

Modified: Jun 12, 2006.

Primary publication: None

Saccharophagus degradans 2-40

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007912

Total Bases: 5057531 bp

Number of genes: 4067

Released: Mar 17, 2006.

Modified: Apr 3, 2006.

Primary publication: None

Saccharopolyspora erythraea NRRL 2338

Sequenced by: Department of Biochemistry, University of Cambridge

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009142

Total Bases: 8212805 bp

Number of genes: 7264

Released: Mar 21, 2007.

Modified: Aug 9, 2007.

Primary publication: Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338.

Salinibacter ruber DSM 13855

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007677

Total Bases: 3551823 bp

Number of genes:2865

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007678

Total Bases: 35505 bp

Number of genes: 33

Released: Dec 20, 2005.

Modified: Mar 30, 2006.

Primary publication: The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.

Salinispora tropica CNB-440

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009380

Total Bases: 5183331 bp

Number of genes: 4654

Released: Apr 17, 2007.

Modified: Aug 14, 2007.

Primary publication: Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica.

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67

Sequenced by: Chang Gung Genomic Medical Center, Chang Gung Memorial Hospital

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006905

Total Bases: 4755700 bp

Number of genes: 4699

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006855

Total Bases: 49558 bp

Number of genes: 51

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006856

Total Bases: 138742 bp

Number of genes: 173

Released: Apr 1, 2005.

Modified: Mar 12, 2007.

Primary publication: The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen.

Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150

Sequenced by: Wash.U-GSC

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006511

Total Bases: 4585229 bp

Number of genes: 4403

Released: Nov 9, 2004.

Modified: Dec 3, 2005.

Primary publication: Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid.

Salmonella enterica subsp. enterica serovar Typhi Ty2

Sequenced by: Univ. Wisconsin

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004631

Total Bases: 4791961 bp

Number of genes: 4645

Released: Mar 20, 2003.

Modified: Dec 14, 2006.

Primary publication: Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18.

Salmonella enterica subsp. enterica serovar Typhi str. CT18

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003198

Total Bases: 4809037 bp

Number of genes: 4711

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003384

Total Bases: 218160 bp

Number of genes: 246

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003385

Total Bases: 106516 bp

Number of genes: 129

Released: Oct 26, 2001.

Modified: Apr 4, 2006.

Primary publication: Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18.

Salmonella typhimurium LT2

Sequenced by: Wash.U-GSC

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003197

Total Bases: 4857432 bp

Number of genes: 4622

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003277

Total Bases: 93939 bp

Number of genes: 112

Released: Oct 26, 2001.

Modified: Apr 13, 2007.

Primary publication: Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.

Shewanella amazonensis SB2B

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008700

Total Bases: 4306142 bp

Number of genes: 3785

Released: Dec 21, 2006.

Modified: Dec 21, 2006.

Primary publication: None

Shewanella sp. ANA-3

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008573

Total Bases: 278942 bp

Number of genes: 251

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008577

Total Bases: 4972204 bp

Number of genes: 4268

Released: Nov 8, 2006.

Modified: Aug 14, 2007.

Primary publication: None

Shewanella baltica OS155

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009052

Total Bases: 5127376 bp

Number of genes: 4521

Released: Feb 20, 2007.

Modified: Feb 27, 2007.

Primary publication: None

Shewanella baltica OS185

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009661

Total Bases: 83224 bp

Number of genes: 75

Purine/Keto/Coding Asymmetry Plot

Accession: NC_00

Total Bases: bp

Number of genes:

Released: Jul 10, 2007.

Modified: Jul 25, 2007.

Primary publication: None

Shewanella denitrificans OS217

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007954

Total Bases: 4545906 bp

Number of genes: 3905

Released: Apr 10, 2006.

Modified: Apr 13, 2006.

Primary publication: None

Shewanella frigidimarina NCIMB 400

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008345

Total Bases: 4845257 bp

Number of genes: 4199

Released: Sep 14, 2006.

Modified: Sep 15, 2006.

Primary publication: None

Shewanella loihica PV-4

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009092

Total Bases: 4602594 bp

Number of genes: 3993

Released: Mar 7, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Shewanella oneidensis MR-1

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004347

Total Bases: 4969803 bp

Number of genes: 4566

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004349

Total Bases: 161613 bp

Number of genes: 172

Released: Oct 9, 2002.

Modified: Jun 20, 2007.

Primary publication-1: Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.

Primary publication-2: Reannotation of Shewanella oneidensis genome.

Shewanella sp. MR-4

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008321

Total Bases: 4706287 bp

Number of genes: 4084

Released: Sep 1, 2006.

Modified: Sep 5, 2006.

Primary publication: None

Shewanella sp. MR-7

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008322

Total Bases: 4792610 bp

Number of genes: 4178

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008320

Total Bases: 6499 bp

Number of genes: 8

Released: Sep 1, 2006.

Modified: Sep 5, 2006.

Primary publication: None

Shewanella putrefaciens CN-32

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009438

Total Bases: 4659220 bp

Number of genes: 4134

Released: Apr 20, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Shewanella sp. W3-18-1

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008750

Total Bases: 4708380 bp

Number of genes: 4217

Released: Jan 3, 2007.

Modified: Jan 5, 2007.

Primary publication: None

Shigella boydii Sb227

Sequenced by: Microbial Genome Center of ChMPH

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007613

Total Bases: 4519823 bp

Number of genes: 4466

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007608

Total Bases: 126697 bp

Number of genes: 149

Released: Nov 9, 2005.

Modified: Jun 28, 2007.

Primary publication: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.

Shigella dysenteriae Sd197

Sequenced by: Microbial Genome Center of ChMPH

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007606

Total Bases: 4369232 bp

Number of genes: 4664

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007607

Total Bases: 182726 bp

Number of genes: 224

Released: Nov 9, 2005.

Modified: Mar 2, 2006.

Primary publication: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.

Shigella flexneri 2a str. 2457T

Sequenced by: Univ. Wisconsin

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004741

Total Bases: 4599354 bp

Number of genes: 4577

Released: Apr 22, 2003.

Modified: Apr 30, 2007.

Primary publication: Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T.

Shigella flexneri 2a str. 301

Sequenced by: Microbial Genome Center of ChMPH

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004337

Total Bases: 4607203 bp

Number of genes: 4566

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004851

Total Bases: 221618 bp

Number of genes: 267

Released: Oct 18, 2002.

Modified: Apr 3, 2006.

Primary publication: Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157.

Shigella flexneri 5 str. 8401

Sequenced by: Microbial Genome Center of ChMPH

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008258

Total Bases: 4574284 bp

Number of genes: 4434

Released: Jul 21, 2006.

Modified: Jul 28, 2006.

Primary publication: Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a.

Shigella sonnei Ss046

Sequenced by: Microbial Genome Center of ChMPH

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007384

Total Bases: 4825265 bp

Number of genes: 4553

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007385

Total Bases: 214396 bp

Number of genes: 241

Released: Aug 29, 2005.

Modified: Jan 23, 2007.

Primary publication: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.

Silicibacter pomeroyi DSS-3

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003911

Total Bases: 4109442 bp

Number of genes: 3901

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006569

Total Bases: 491611 bp

Number of genes: 447

Released: Dec 17, 2004.

Modified: Jan 18, 2006.

Primary publication: Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.

Silicibacter sp. TM1040

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008044

Total Bases: 3200938 bp

Number of genes: 3082

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008042

Total Bases: 130973 bp

Number of genes: 116

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008043

Total Bases: 821788 bp

Number of genes: 758

Released: May 22, 2006.

Modified: May 24, 2006.

Primary publication: None

Sinorhizobium medicae WSM419

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_0009620

Total Bases: 1570951 bp

Number of genes: 1478

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009636

Total Bases: 3781904 bp

Number of genes: 3635

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009621

Total Bases: 1245408 bp

Number of genes: 1278

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009622

Total Bases: 219313 bp

Number of genes: 196

Released: Jun 29, 2007.

Modified: Jul 3, 2007.

Primary publication: Sinorhizobium medicae sp. nov., isolated from annual Medicago spp.

Sinorhizobium meliloti 1021

Sequenced by: MELILO

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003047

Total Bases: 3654135 bp

Number of genes: 3412

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003037

Total Bases: 1354226 bp

Number of genes: 1296

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003078

Total Bases: 1683333 bp

Number of genes: 1571

Released: Jul 28, 2001.

Modified: Dec 3, 2005.

Primary publication-1: The composite genome of the legume symbiont Sinorhizobium meliloti.

Primary publication-2: Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.

Sodalis glossinidius str. 'morsitans'

Sequenced by: Kitasato Institute for Life Sciences, Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007712

Total Bases: 4171146 bp

Number of genes: 2523

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007713

Total Bases: 83306 bp

Number of genes: 54

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007714

Total Bases: 27240 bp

Number of genes: 23

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007715

Total Bases: 10810 bp

Number of genes: 7

Released: Jan 10, 2006.

Modified: Mar 30, 2006.

Primary publication: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host.

Solibacter usitatus Ellin6076

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008536

Total Bases: 9965640 bp

Number of genes: 8002

Released: Oct 16, 2006.

Modified: Nov 1, 2006.

Primary publication: None

Sphingomonas wittichii RW1

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009507

Total Bases: 310228 bp

Number of genes: 288

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009511

Total Bases: 5382261 bp

Number of genes:

Purine/Keto/Coding Asymmetry Plot

Accession: NC_00950

Total Bases: 222757 bp

Number of genes: 226

Released: May 31, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Sphingopyxis alaskensis RB2256

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008048

Total Bases: 3345170 bp

Number of genes: 3230

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008036

Total Bases: 28543 bp

Number of genes: 30

Released: May 18, 2006.

Modified: May 30, 2006.

Primary publication: None

Staphylococcus aureus RF122

Sequenced by: Univ. Minnesota

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007622

Total Bases: 2742531 bp

Number of genes: 2665

Released: Nov 24, 2005.

Modified: Jan 18, 2006.

Primary publication: None

Staphylococcus aureus subsp. aureus COL

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002951

Total Bases: 2809422 bp

Number of genes: 2724

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006629

Total Bases: 4440 bp

Number of genes: 3

Released: Jan 13, 2005.

Modified: Jan 17, 2006.

Primary publication: Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.

Staphylococcus aureus subsp. aureus JH1

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009619

Total Bases: 30429 bp

Number of genes: 36

Purine/Keto/Coding Asymmetry Plot

Accession: NC_00

Total Bases: 2906507 bp

Number of genes: 2870

Released: Jun 28, 2007.

Modified: Jul 3, 2007.

Primary publication: None

Staphylococcus aureus subsp. aureus JH9

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009477

Total Bases: 30429bp

Number of genes: 31

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009487

Total Bases: 2906700 bp

Number of genes: 2816

Released: May 18, 2007.

Modified: Aug 8, 2007.

Primary publication: None

Staphylococcus aureus subsp. aureus MRSA252

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002952

Total Bases: 2902619 bp

Number of genes: 2845

Released: Jun 24, 2004.

Modified: Apr 3, 2006.

Primary publication: Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.

Staphylococcus aureus subsp. aureus MSSA476

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002953

Total Bases: 2799802 bp

Number of genes: 2723

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005951

Total Bases: 20652 bp

Number of genes: 24

Released: Jun 24, 2004.

Modified: Dec 3, 2005.

Primary publication: Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.

Staphylococcus aureus subsp. aureus MW2

Sequenced by: NITE

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003923

Total Bases: 2820462 bp

Number of genes: 2712

Released: Jun 5, 2002.

Modified: Jun 19, 2007.

Primary publication: Genome and virulence determinants of high virulence community-acquired MRSA.

Staphylococcus aureus subsp. aureus Mu50

Sequenced by: Juntendo University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002758

Total Bases: 2878529 bp

Number of genes: 2775

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002774

Total Bases: 25107 bp

Number of genes: 34

Released: Jun 22, 2001.

Modified: Jun 19, 2007.

Primary publication: Whole genome sequencing of meticillin-resistant Staphylococcus aureus.

Staphylococcus aureus subsp. aureus N315

Sequenced by: Juntendo University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002745

Total Bases: 2814816 bp

Number of genes: 2669

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003140

Total Bases: 24653 bp

Number of genes: 31

Released: Jun 22, 2001.

Modified: Jun 19, 2007.

Primary publication: Whole genome sequencing of meticillin-resistant Staphylococcus aureus.

Staphylococcus aureus subsp. aureus NCTC 8325

Sequenced by: University of Oklahoma

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007795

Total Bases: 2821361 bp

Number of genes: 2969

Released: Feb 13, 2006.

Modified: Mar 30, 2006.

Primary publication: None

Staphylococcus aureus subsp. aureus USA300

Sequenced by: University of California, San Francisco

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007793

Total Bases: 2872769 bp

Number of genes: 2648

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007790

Total Bases: 3125 bp

Number of genes: 5

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007791

Total Bases: 4439 bp

Number of genes: 3

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007792

Total Bases: 37136 bp

Number of genes: 36

Released: Feb 10, 2006.

Modified: Jan 26, 2007.

Primary publication: Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus.

Staphylococcus epidermidis ATCC 12228

Sequenced by: Chinese National HGC, Shanghai

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004461

Total Bases: 2499279 bp

Number of genes: 2495

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005008

Total Bases: 4439 bp

Number of genes: 3

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005007

Total Bases: 4679 bp

Number of genes: 6

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005006

Total Bases: 8007 bp

Number of genes: 8

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005005

Total Bases: 17261 bp

Number of genes: 16

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005004

Total Bases: 24365 bp

Number of genes: 22

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005003

Total Bases: 6585 bp

Number of genes: 11

Released: Sep 3, 2003.

Modified: Dec 16, 2005.

Primary publication: Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).

Staphylococcus epidermidis RP62A

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002976

Total Bases: 2161530 bp

Number of genes: 2635

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006663

Total Bases: 7310 bp

Number of genes: 33

Released: Jan 18, 2005.

Modified: Jan 17, 2006.

Primary publication: Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.

Staphylococcus haemolyticus JCSC1435

Sequenced by: NITE

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007168

Total Bases: 2685015 bp

Number of genes: 2753

Released: Jun 30, 2005.

Modified: Jan 18, 2006.

Primary publication: Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species.

Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Sequenced by: Kitasato Institute for Life Sciences, Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007350

Total Bases: 2516575 bp

Number of genes: 2527

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007351

Total Bases: 38454 bp

Number of genes: 45

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007352

Total Bases: 22870 bp

Number of genes: 23

Released: Aug 12, 2005.

Modified: Jun 29, 2007.

Primary publication: Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection.

Staphylothermus marinus F1

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009033

Total Bases: 1570485 bp

Number of genes: 1646

Released: Feb 21, 2007.

Modified: Mar 2, 2007.

Primary publication: None

Streptococcus agalactiae 2603V/R

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004116

Total Bases: 2160267 bp

Number of genes: 2271

Released: Aug 30, 2002.

Modified: Jun 20, 2007.

Primary publication: Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae.

Streptococcus agalactiae A909

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007432

Total Bases: 2127839 bp

Number of genes: 2136

Released: Sep 29, 2005.

Modified: Mar 30, 2006.

Primary publication: Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".

Streptococcus agalactiae NEM316

Sequenced by: Institut Pasteur

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004368

Total Bases: 2211485 bp

Number of genes: 2235

Released: Oct 2, 2002.

Modified: May 24, 2007.

Primary publication: Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease.

Streptococcus mutans UA159

Sequenced by: Univ. Oklahoma

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004350

Total Bases: 2030921 bp

Number of genes: 2042

Released: Oct 25, 2002.

Modified: Apr 4, 2006.

Primary publication: Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen.

Streptococcus pneumoniae D39

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008533

Total Bases: 2046115 bp

Number of genes: 2069

Released: Oct 12, 2006.

Modified: Jan 23, 2007.

Primary publication: Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison With That of Unencapsulated Laboratory Strain R6.

Streptococcus pneumoniae R6

Sequenced by: Eli Lilly and Company

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003098

Total Bases: 2038615 bp

Number of genes: 2116

Released: Sep 7, 2001.

Modified: Jan 17, 2006.

Primary publication: Genome of the bacterium Streptococcus pneumoniae strain R6.

Streptococcus pneumoniae TIGR4

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003028

Total Bases: 2160837 bp

Number of genes: 2305

Released: Jul 21, 2001.

Modified: Nov 22, 2006.

Primary publication: Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Streptococcus pyogenes M1 GAS

Sequenced by: Univ. Oklahoma

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002737

Total Bases: 1852441 bp

Number of genes: 1805

Released: Apr 11, 2001.

Modified: Jun 8, 2007.

Primary publication: Complete genome sequence of an M1 strain of Streptococcus pyogenes.

Streptococcus pyogenes str. Manfredo

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009332

Total Bases: 1841271 bp

Number of genes: 1907

Released: Mar 29, 2007.

Modified: Aug 14, 2007.

Primary publication: Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo.

Streptococcus pyogenes MGAS10270

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008022

Total Bases: 1928252 bp

Number of genes: 2068

Released: May 4, 2006.

Modified: Mar 20, 2007.

Primary publication:

Streptococcus pyogenes MGAS10394

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006086

Total Bases: 1899877 bp

Number of genes: 1971

Released: Jul 24, 2004.

Modified: Apr 4, 2006.

Primary publication: Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain.

Streptococcus pyogenes MGAS10750

Sequenced by: Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008024

Total Bases: 1937111 bp

Number of genes: 2060

Released: May 4, 2006.

Modified: May 9, 2006.

Primary publication: Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.

Streptococcus pyogenes MGAS2096

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008023

Total Bases: 1860355 bp

Number of genes: 1979

Released: May 4, 2006.

Modified: May 9, 2006.

Primary publication: Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.

Streptococcus pyogenes MGAS315

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004070

Total Bases: 1900521 bp

Number of genes: 1951

Released: Jul 18, 2002.

Modified: Jan 17, 2006.

Primary publication: Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence.

Streptococcus pyogenes MGAS5005

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007297

Total Bases: 1838554 bp

Number of genes: 1950

Released: Aug 5, 2005.

Modified: Dec 3, 2005.

Primary publication: Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events.

Streptococcus pyogenes MGAS6180

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007296

Total Bases: 1897573 bp

Number of genes: 1977

Released: Aug 4, 2005.

Modified: Dec 3, 2005.

Primary publication: Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity.

Streptococcus pyogenes MGAS8232

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003485

Total Bases: 1895017 bp

Number of genes: 1857

Released: Mar 28, 2002.

Modified: Jun 20, 2007.

Primary publication: Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks.

Streptococcus pyogenes MGAS9429

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008021

Total Bases: 1836467bp

Number of genes: 1962

Released: May 4, 2006.

Modified: May 9, 2006.

Primary publication: Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.

Streptococcus pyogenes SSI-1

Sequenced by: Osaka University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004606

Total Bases: 1894275 bp

Number of genes: 1928

Released: Jun 12, 2003.

Modified: Jun 21, 2007.

Primary publication: Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution.

Streptococcus sanguinis SK36

Sequenced by: Virginia Commonwealth University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009009

Total Bases: 2388435 bp

Number of genes: 2348

Released: Feb 9, 2007.

Modified: Feb 16, 2007.

Primary publication-1: Ecology and nature of immunoglobulin A1 protease-producing streptococci in the human oral cavity and pharynx.

Primary publication-2: Genome of the opportunistic pathogen Streptococcus sanguinis.

Streptococcus suis 05ZYH33

Sequenced by: Beijing Institute of Genomics, Chinese Academy of Sciences

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009442

Total Bases: 2096309 bp

Number of genes: 2254

Released: Apr 24, 2007.

Modified: Jun 25, 2007.

Primary publication: A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates.

Streptococcus suis 98HAH33

Sequenced by: Beijing Institute of Genomics, Chinese Academy of Sciences

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009443

Total Bases: 2095698 bp

Number of genes: 2253

Released: Apr 24, 2007.

Modified: Jul 2, 2007.

Primary publication: A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates.

Streptococcus thermophilus CNRZ1066

Sequenced by: Institut National de la Recherche Agronomique, France

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006449

Total Bases: 1796226bp

Number of genes: 2000

Released: Nov 16, 2004.

Modified: Jan 18, 2006.

Primary publication: Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus.

Streptococcus thermophilus LMD-9

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008532

Total Bases: 1856368 bp

Number of genes: 2003

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008500

Total Bases: 4449 bp

Number of genes: 4

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008501

Total Bases: 3361 bp

Number of genes: 2

Released: Oct 13, 2006.

Modified: Aug 14, 2007.

Primary publication: Comparative genomics of the lactic acid bacteria.

Streptococcus thermophilus LMG 18311

Sequenced by: Univ. Catholique de Louvain, Belgium

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006448

Total Bases: 1796846 bp

Number of genes: 1974

Released: Nov 15, 2004.

Modified: Jan 18, 2006.

Primary publication: Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus.

Streptomyces avermitilis MA-4680

Sequenced by: NITE

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003155

Total Bases: 9025608 bp

Number of genes: 7666

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004719

Total Bases: 94287 bp

Number of genes: 96

Released: Sep 27, 2001.

Modified: Apr 13, 2006.

Primary publication-1: Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.

Primary publication-2: Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.

Streptomyces coelicolor A3(2)

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003888

Total Bases: 8667507 bp

Number of genes: 7912

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003903

Total Bases: 356023 bp

Number of genes: 355

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003904

Total Bases: 31317 bp

Number of genes: 34

Released: Jul 1, 1996.

Modified: Jun 28, 2007.

Primary publication-1: A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome.

Primary publication-2: Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Primary publication-3: Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism.

Sulfolobus acidocaldarius DSM 639

Sequenced by: Danish Archaea Centre

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007181

Total Bases: 2225959 bp

Number of genes: 2329

Released: Jul 5, 2005.

Modified: Mar 30, 2006.

Primary publication: The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota.

Sulfolobus solfataricus P2

Sequenced by: European/Canadian Consortium

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002754

Total Bases: 2992245 bp

Number of genes: 3031

Released: Jun 28, 2001.

Modified: Jul 25, 2007.

Primary publication: New insertion sequences of Sulfolobus: functional properties and implications for genome evolution in hyperthermophilic archaea.

Sulfolobus tokodaii str. 7

Sequenced by: NITE

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003106

Total Bases: 2694756 bp

Number of genes: 2874

Released: Sep 27, 2001.

Modified: Jun 19, 2007.

Primary publication-1: Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7.

Primary publication-2: New insertion sequences of Sulfolobus: functional properties and implications for genome evolution in hyperthermophilic archaea.

Sulfurovum sp. NBC37-1

Sequenced by: Japan Agency for Marine-Earth Science and Technology

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009663

Total Bases: 2562277 bp

Number of genes: 2519

Released: Jul 11, 2007.

Modified: Jul 25, 2007.

Primary publication: Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field.

Symbiobacterium thermophilum IAM 14863

Sequenced by: Kitasato Institute for Life Sciences, Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006177

Total Bases: 3566135 bp

Number of genes: 3481

Released: Sep 24, 2004.

Modified: Jun 26, 2007.

Primary publication: Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism.

Synechococcus elongatus PCC 6301

Sequenced by: Nagoya University, Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006576

Total Bases: 2696255 bp

Number of genes: 2582

Released: Dec 21, 2004.

Modified: Jan 23, 2007.

Primary publication-1: Latent nitrate transport activity of a novel sulfate permease-like protein of the cyanobacterium Synechococcus elongatus.

Primary publication-2: A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria.

Primary publication-3: A new class of signal transducer in His-Asp phosphorelay systems.

Primary publication-4: Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization.

Synechococcus elongatus PCC 7942

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007604

Total Bases: 2695903 bp

Number of genes: 2665

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007595

Total Bases: 46366 bp

Number of genes: 50

Released: Mar 10, 2004.

Modified: Jun 8, 2007.

Primary publication: None

Synechococcus sp. CC9311

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008319

Total Bases: 2606748 bp

Number of genes: 2944

Released: Sep 1, 2006.

Modified: Sep 5, 2006.

Primary publication: Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.

Synechococcus sp. CC9605

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007516

Total Bases: 2510659 bp

Number of genes: 2756

Released: Oct 27, 2005.

Modified: Jun 16, 2006.

Primary publication: None

Synechococcus sp. CC9902

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007513

Total Bases: 2234828 bp

Number of genes: 2358

Released: Oct 26, 2005.

Modified: Jun 16, 2006.

Primary publication: None

Synechococcus sp. JA-2-3B'a(2-13)

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007776

Total Bases: 3046682bp

Number of genes: 2942

Released: Feb 6, 2006.

Modified: Mar 30, 2006.

Primary publication: Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.

Synechococcus sp. JA-3-3Ab

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007775

Total Bases: 2932766 bp

Number of genes: 2897

Released: Feb 6, 2006.

Modified: Mar 30, 2006.

Primary publication: ffect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.

Synechococcus sp. RCC307 RCC 307

Sequenced by: Genoscope

Sequenced by: Institute Pasterur

Sequenced by: Roscoff Center for Oceanography

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009482

Total Bases: 2224914 bp

Number of genes: 2583

Released: May 19, 2007.

Modified: Aug 9, 2007.

Primary publication: None

Synechococcus sp. WH 7803 WH7893

Sequenced by: Genoscope

Sequenced by: Institute Pasterur

Sequenced by: Roscoff Center for Oceanography

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009481

Total Bases: 2366980 bp

Number of genes: 2586

Released: May 19, 2007.

Modified: Aug 14, 2007.

Primary publication: None

Synechococcus sp. WH 8102

Sequenced by: NCBI Genome Project

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005070

Total Bases: 2434428 bp

Number of genes: 2583

Released: Aug 15, 2003.

Modified: Jun 16, 2006.

Primary publication: The genome of a motile marine Synechococcus.

Synechocystis sp. PCC 6803

Sequenced by: Kazusa

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000911

Total Bases: 3221bp

Number of genes:

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005229

Total Bases: 119895 bp

Number of genes: 132

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005230

Total Bases: 103307 bp

Number of genes: 106

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005231

Total Bases: 44343 bp

Number of genes: 49

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005232

Total Bases: 106004 bp

Number of genes: 110

Released: Aug 31, 1995.

Modified: Jul 25, 2006.

Primary publication-1: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome.

Primary publication-2: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

Syntrophobacter fumaroxidans MPOB

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008554

Total Bases: 4990251 bp

Number of genes: 4162

Released: Oct 26, 2006.

Modified: Nov 1, 2006.

Primary publication: None

Syntrophomonas wolfei subsp. wolfei str. Goettingen

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008346

Total Bases: 2936195 bp

Number of genes: 2642

Released: Sep 14, 2006.

Modified: Sep 15, 2006.

Primary publication: None

Syntrophus aciditrophicus SB

Sequenced by: Integrated Genomics

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007759

Total Bases: 3179300 bp

Number of genes: 3219

Released: Jan 26, 2006.

Modified: May 9, 2007.

Primary publication: The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth.

Thermoanaerobacter tengcongensis MB4

Sequenced by: Beijing Center.HGP

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003869

Total Bases: 2689445 bp

Number of genes: 2721

Released: May 9, 2002.

Modified: Dec 3, 2005.

Primary publication-1: A complete sequence of the T. tengcongensis genome.

Primary publication-2: An analysis of the proteomic profile for Thermoanaerobacter tengcongensis under optimal culture conditions.

Thermobifida fusca YX

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007333

Total Bases: 3642249bp

Number of genes: 3184

Released: Aug 8, 2005.

Modified: Aug 16, 2007.

Primary publication: Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX.

Thermococcus kodakarensis KOD1

Sequenced by: Kyoto University, Japan

Sequenced by: Dragon Genomics

Sequenced by: Kwansei Gakuin University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006624

Total Bases: 2088737 bp

Number of genes: 2358

Released: Jan 13, 2005.

Modified: Jan 17, 2006.

Primary publication: Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.

Publication-2: Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp.

Publication-3: Crystal structure of DNA polymerase from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.

Publication-4: Catalyzing "hot" reactions: enzymes from hyperthermophilic Archaea.

Publication-5: Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.

Publication-6: Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.

Thermofilum pendens Hrk 5

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008698

Total Bases: 1781889 bp

Number of genes: 1879

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008696

Total Bases: 31504 bp

Number of genes: 52

Released: Dec 18, 2007.

Modified: Dec 21, 2007.

Primary publication: None

Thermoplasma acidophilum DSM 1728

Sequenced by: Max-Plank-Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002578

Total Bases: 1564906 bp

Number of genes: 1530

Released: Oct 12, 2000.

Modified: Jun 7, 2007.

Primary publication: The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum.

Thermoplasma volcanium GSS1

Sequenced by: National Institute of Advanced Industrial Science and Technology, Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002689

Total Bases: 1584804 bp

Number of genes: 1548

Released: Dec 20, 2000.

Modified: Dec 3, 2005.

Primary publication: Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium.

Thermosipho melanesiensis BI429

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009616

Total Bases: 1915238 bp

Number of genes: 1992

Released: Jun 26, 2007.

Modified: Jun 29, 2007.

Primary publication: Thermosipho melanesiensis sp. nov., a new thermophilic anaerobic bacterium belonging to the order Thermotogales, isolated from deep-sea hydrothermal vents in the southwestern Pacific Ocean.

Thermosynechococcus elongatus BP-1

Sequenced by: Kazusa

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004113

Total Bases: 2593857 bp

Number of genes: 2525

Released: Sep 21, 2002.

Modified: Jun 16, 2006.

Primary publication: Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.

Thermotoga maritima MSB8

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000853

Total Bases: 1860725 bp

Number of genes: 1928

Released: Jun 9, 1999.

Modified: Dec 3, 2005.

Primary publication: Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.

Thermotoga petrophila RKU-1

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009486

Total Bases: 1823511 bp

Number of genes: 1864

Released: May 18, 2007.

Modified: Jun 26, 2007.

Primary publication: None

Thermus thermophilus HB27

Sequenced by: Goettingen Genomics Laboratory

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005835

Total Bases: 1894877 bp

Number of genes: 2035

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005838

Total Bases: 232605 bp

Number of genes: 228

Released: Apr 6, 2004.

Modified: Apr 4, 2006.

Primary publication: The genome sequence of the extreme thermophile Thermus thermophilus.

Thermus thermophilus HB8

Sequenced by: National Institute of Advanced Industrial Science and Technology, Japan

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006461

Total Bases: 1849742 bp

Number of genes: 2026

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006463

Total Bases: 9322 bp

Number of genes: 14

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006462

Total Bases: 256992 bp

Number of genes: 251

Released: Apr 5, 2004.

Modified: Jun 29, 2007.

Primary publication: None

Thiobacillus denitrificans ATCC 25259

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007404

Total Bases: 2909809 bp

Number of genes: 2879

Released: Sep 1, 2005.

Modified: Feb 7, 2006.

Primary publication: The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.

Thiomicrospira crunogena XCL-2

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007520

Total Bases: 2427734bp

Number of genes: 2255

Released: Oct 31, 2005.

Modified: Nov 22, 2006.

Primary publication: The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2.

Thiomicrospira denitrificans ATCC 33889

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007575

Total Bases: 2201561 bp

Number of genes: 2163

Released: Nov 1, 2005.

Modified: Apr 4, 2006.

Primary publication: None

Treponema denticola ATCC 35405

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002967

Total Bases: 2843201 bp

Number of genes: 2838

Released: Apr 6, 2004.

Modified: Jan 26, 2007.

Primary publication: Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.

Treponema pallidum subsp. pallidum str. Nichols

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_000919

Total Bases: 1138011 bp

Number of genes: 1095

Released: Jul 17, 1998.

Modified: Dec 3, 2005.

Primary publication: Complete genome sequence of Treponema pallidum, the syphilis spirochete.

Trichodesmium erythraeum IMS101

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008312

Total Bases: 7750108 bp

Number of genes: 5124

Released: Jul 6, 2006.

Modified: Aug 8, 2007.

Primary publication: None

Tropheryma whipplei TW08/27

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004551

Total Bases: 925938 bp

Number of genes: 839

Released: Feb 28, 2003.

Modified: May 24, 2007.

Primary publication: Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei.

Tropheryma whipplei str. Twist

Sequenced by: Genoscope

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004572

Total Bases: 927303 bp

Number of genes: 862

Released: Aug 7, 2003.

Modified: Apr 3, 2006.

Primary publication: Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome.

uncultured methanogenic archaeon RC-I

Sequenced by: Max Planck Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009464

Total Bases: 3179916 bp

Number of genes: 3166

Released: Jul 21, 2006.

Modified: Jul 21, 2006.

Primary publication: Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere.

Ureaplasma parvum serovar 3 str. ATCC 700970

Sequenced by: Univ.AL-Birmingham

Sequenced by: J. Craig Venter Institute

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002162

Total Bases: 751719 bp

Number of genes: 653

Released: Oct 26, 2000.

Modified: Dec 3, 2005.

Primary publication: The complete sequence of the mucosal pathogen Ureaplasma urealyticum.

Verminephrobacter eiseniae EF01-2

Sequenced by: DOE Joint Genome Institute

Sequenced by: NCBI

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008771

Total Bases: 31194 bp

Number of genes: 39

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008786

Total Bases: 5566749 bp

Number of genes: 5070

Released: Jan 9, 2007.

Modified: Jan 11, 2007.

Primary publication: Transmission of nephridial bacteria of the earthworm Eisenia fetida.

Vibrio cholerae O1 biovar eltor str. N16961

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002505

Total Bases: 2961149 bp

Number of genes: 2889

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002506

Total Bases: 1072315 bp

Number of genes: 1119

Released: Aug 22, 2000.

Modified: Jan 18, 2006.

Primary publication: DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.

Vibrio cholerae O395

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009456

Total Bases: 1108250 bp

Number of genes: 1137

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009457

Total Bases: 3024069 bp

Number of genes: 2861

Released: May 8, 2007.

Modified: May 21, 2007.

Primary publication: None

Vibrio fischeri ES114

Sequenced by: W.M. Keck Microbial Communities and Cell-signaling Program

Sequenced by: Integrated Genomics, Chicago

Sequenced by: Kewalo Marine Lab, U of H

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006840

Total Bases: 2906179 bp

Number of genes: 2716

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006841

Total Bases: 1332022 bp

Number of genes: 1186

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006842

Total Bases: 45849 bp

Number of genes: 55

Released: Feb 11, 2005.

Modified: Apr 3, 2006.

Primary publication: he winnowing: establishing the squid-vibrio symbiosis.

Publication-2: Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners.

Vibrio parahaemolyticus RIMD 2210633

Sequenced by: Osaka University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004603

Total Bases: 3288558 bp

Number of genes: 3223

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004605

Total Bases: bp

Number of genes:

Released: Jun 2, 2000.

Modified: Dec 2, 2005.

Primary publication-1: A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains.

Primary publication-2: Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.

Vibrio vulnificus CMCP6

Sequenced by: Chonnam University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004459

Total Bases: 3281945 bp

Number of genes: 3049

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004460

Total Bases: 1844853 bp

Number of genes: 1575

Released: Sep 23, 2003.

Modified: Nov 22, 2006.

Primary publication: Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients.

Vibrio vulnificus YJ016

Sequenced by: NHRI, China

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005139

Total Bases: 3354505 bp

Number of genes: 3387

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005140

Total Bases: 1857073 bp

Number of genes: 1711

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005128

Total Bases: 48508 bp

Number of genes: 69

Released: Dec 6, 2003.

Modified: Apr 3, 2006.

Primary publication: Comparative genome analysis of Vibrio vulnificus, a marine pathogen.

Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis

Sequenced by: Yale University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004344

Total Bases: 697724 bp

Number of genes: 651

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003425

Total Bases: 5280 bp

Number of genes: 6

Released: Sep 10, 2002.

Modified: Dec 2, 2005.

Primary publication: Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia.

Wolbachia endosymbiont of Drosophila melanogaster

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002978

Total Bases: 1267782 bp

Number of genes: 1309

Released: Feb 11, 2004.

Modified: Dec 2, 2005.

Primary publication: Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.

Wolbachia endosymbiont strain TRS of Brugia malayi

Sequenced by: New England Biolabs, Inc.

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006833

Total Bases: 1080084 bp

Number of genes: 940

Released: Feb 2, 2005.

Modified: Dec 3, 2005.

Primary publication: The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode.

Wolinella succinogenes DSM 1740

Sequenced by: Max-Plank-Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005090

Total Bases: 2110355 bp

Number of genes: 2091

Released: Sep 23, 2003.

Modified: Jun 22, 2007.

Primary publication: Complete genome sequence and analysis of Wolinella succinogenes.

Xanthobacter autotrophicus Py2

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009717

Total Bases: 316164 bp

Number of genes: 308

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009720

Total Bases: 5308934 bp

Number of genes: 4847

Released: Jul 30, 2007.

Modified: Jul 31, 2007.

Primary publication: None

Xanthomonas axonopodis pv. citri str. 306

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003919

Total Bases: 5175554 bp

Number of genes: 4374

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003921

Total Bases: 33700 bp

Number of genes: 42

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003922

Total Bases: 64920 bp

Number of genes: 73

Released: May 25, 2002.

Modified: Jan 17, 2006.

Primary publication: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Xanthomonas campestris pv. campestris str. 8004

Sequenced by: Chinese National HGC, Shanghai

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007086

Total Bases: 5148708 bp

Number of genes: 4370

Released: May 25, 2005.

Modified: Jan 18, 2006.

Primary publication: Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris.

Xanthomonas campestris pv. campestris str. ATCC 33913

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003902

Total Bases: 5076188 bp

Number of genes: 4242

Released: May 25, 2002.

Modified: Dec 2, 2005.

Primary publication: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Xanthomonas campestris pv. vesicatoria str. 85-10

Sequenced by: Bielefeld University

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007508

Total Bases: 5178466 bp

Number of genes: 4604

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007504

Total Bases: 1852 bp

Number of genes: 2

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007505

Total Bases: 19146 bp

Number of genes: 25

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007506

Total Bases: 38116 bp

Number of genes: 44

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007507

Total Bases: 182572 bp

Number of genes: 179

Released: Oct 21, 2005.

Modified: Apr 21, 2006.

Primary publication: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.

Xanthomonas oryzae pv. oryzae KACC10331

Sequenced by: NIAB, Rural Development Administration

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006834

Total Bases: 4941439 bp

Number of genes: 4209

Released: Feb 2, 2005.

Modified: Apr 26, 2007.

Primary publication: The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.

Xanthomonas oryzae pv. oryzae MAFF 311018

Sequenced by: National Institute of Agrobiological Sciences

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_007705

Total Bases: 4940217 bp

Number of genes: 4431

Released: Jan 4, 2006.

Modified: Mar 30, 2006.

Primary publication: None

Xylella fastidiosa 9a5c

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002488

Total Bases: 2679306 bp

Number of genes: 2838

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002489

Total Bases: 1286 bp

Number of genes: 2

Purine/Keto/Coding Asymmetry Plot

Accession: NC_002490

Total Bases: 51158 bp

Number of genes: 65

Released: Jul 26, 2000.

Modified: Dec 2, 2005.

Primary publication: The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis.

Xylella fastidiosa Temecula1

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004556

Total Bases: 2519802 bp

Number of genes: 2123

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004554

Total Bases: 1346 bp

Number of genes: 2

Released: Jan 21, 2003.

Modified: Apr 3, 2006.

Primary publication: Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.

Yersinia enterocolitica subsp. enterocolitica 8081

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008800

Total Bases: 4615899 bp

Number of genes: 4192

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008791

Total Bases: 67721 bp

Number of genes: 89

Released: Jan 12, 2007.

Modified: Jan 20, 2007.

Primary publication-1: Annotation and evolutionary relationships of a small regulatory RNA gene micF and its target ompF in Yersinia species.

Primary publication-2: The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081.

Yersinia pestis Antiqua

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008150

Total Bases: 4702289 bp

Number of genes: 4273

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008120

Total Bases: 96471 bp

Number of genes: 99

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008121

Total Bases: 10777 bp

Number of genes: 9

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008122

Total Bases: 70299 bp

Number of genes: 89

Released: Jun 9, 2006.

Modified: Aug 8, 2007.

Primary publication: omplete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen.

Yersinia pestis CO92

Sequenced by: Sanger Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003143

Total Bases: 4653728 bp

Number of genes: 4113

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003131

Total Bases: 70305 bp

Number of genes: 102

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003132

Total Bases: 9612 bp

Number of genes: 9

Purine/Keto/Coding Asymmetry Plot

Accession: NC_003134

Total Bases: 96210 bp

Number of genes: 107

Released: Oct 5, 2001.

Modified: Jan 26, 2007.

Primary publication: Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis.

Yersinia pestis KIM

Sequenced by: Univ. Wisconsin

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004088

Total Bases: 4600755 bp

Number of genes: 4240

Purine/Keto/Coding Asymmetry Plot

Accession: NC_004838

Total Bases: 100990 bp

Number of genes: 119

Released: Jul 27, 2002.

Modified: Jan 26, 2006.

Primary publication: Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis.

Yersinia pestis Nepal516

Sequenced by: DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008149

Total Bases: 4534590 bp

Number of genes: 4090

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008118

Total Bases: 100918 bp

Number of genes: 104

Purine/Keto/Coding Asymmetry Plot

Accession: NC_008119

Total Bases: 10778 bp

Number of genes: 9

Released: Jun 9, 2006.

Modified: Aug 8, 2007.

Primary publication: Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen.

Yersinia pestis Pestoides F

Sequenced by: US DOE Joint Genome Institute

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009377

Total Bases: 71507 bp

Number of genes: 93

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009381

Total Bases: 4517345 bp

Number of genes: 4039

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009378

Total Bases: 137010 bp

Number of genes: 131

Released: Apr 13, 2007.

Modified: Aug 8, 2007.

Primary publication: Pestoides F, a Yersinia pestis strain lacking plasminogen activator, is virulent by the aerosol route.

Yersinia pestis biovar Microtus str. 91001

Sequenced by: Academy of Military Medical Sciences, The Institute of Microbiology and Epidemiology, China

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005810

Total Bases: 4595065 bp

Number of genes: 4138

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005813

Total Bases: 70159 bp

Number of genes: 99

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005814

Total Bases: 21742 bp

Number of genes: 30

Purine/Keto/Coding Asymmetry Plot

Accession: NC_005815

Total Bases: 106642 bp

Number of genes: 128

Purine/Keto/Coding Asymmetry Plot

Accession: NC_00816

Total Bases: 9609 bp

Number of genes: 10

Released: Jun 4, 2004.

Modified: Aug 9, 2006.

Primary publication-1: Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans.

Primary publication-2: Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus.

Yersinia pseudotuberculosis IP 31758 IP31758

Sequenced by: TIGR

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_00

Total Bases: 58679 bp

Number of genes: 65

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009708

Total Bases: 4723306 bp

Number of genes: 4293

Purine/Keto/Coding Asymmetry Plot

Accession: NC_009705

Total Bases: 153140 bp

Number of genes: 136

Released: Jul 23, 2007.

Modified: Jul 27, 2007.

Primary publication: None

Yersinia pseudotuberculosis IP 32953

Sequenced by: Lawrence Livermore National Laboratory

Sequenced by: Institute Pateur

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006155

Total Bases: 4744671 bp

Number of genes: 4095

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006154

Total Bases: 27702 bp

Number of genes: 43

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006153

Total Bases: 68525 bp

Number of genes: 99

Released: Sep 11, 2004.

Modified: Jun 26, 2007.

Primary publication: Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis.

Zymomonas mobilis subsp. mobilis ZM4

Sequenced by: Macrogen Inc.

Local FTP

Purine/Keto/Coding Asymmetry Plot

Accession: NC_006526

Total Bases: 2056416 bp

Number of genes: 2058

Released: Dec 12, 2004.

Modified: DEc 3, 2005.

Primary publication: The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4.

© 2005 Seán Quinlan, Trustees of Boston University
Comments or questions to: <wwwadmin@darwin.bu.edu>