Completed Bacteria Genomes collected resources

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A B C D E F H I J K L M N O P Q R S T U V W X Y Z

Acidobacteria bacterium Ellin345

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008009
Total Bases: 5650368 bp
Number of genes: 4834
Released: May 4, 2006.
Modified: May 10, 2006.
Primary publication: Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys.

Acinetobacter sp. ADP1

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005966
Total Bases: 3598621 bp
Number of genes: 3425
Released: Oct 30, 2004 .
Modified: Jan 17, 2006.
Primary publication: Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.

Aeropyrum pernix K1

Sequenced by: NITE
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000854
Total Bases: 1669695 bp
Number of genes: 1893
Released: Jun 26, 1999.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.

Agrobacterium tumefaciens str. C58 Cereon

Sequenced by: Cereon
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003062
Total Bases: 2841581 bp
Number of genes: 2760
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003063
Total Bases: 2074782 bp
Number of genes: 1852
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003064
Total Bases: 542869 bp
Number of genes: 547
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003065
Total Bases: 214233 bp
Number of genes: 201
Released: Dec 18, 2001.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Agrobacterium tumefaciens str. C58 U. Washington

Sequenced by: University of Washington
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003304
Total Bases: 2841490 bp
Number of genes: 2835
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003305
Total Bases: 2075560 bp
Number of genes: 1899
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003306
Total Bases: 542780 bp
Number of genes: 550
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003308
Total Bases: 214324 bp
Number of genes: 198
Released: Dec 18, 2001.
Modified: Jun 26, 2006.
Primary publication: Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.

Alcanivorax borkumensis SK2

Sequenced by: Bielefeld
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008260
Total Bases: 3120143 bp
Number of genes: 2806
Released: Jul 24, 2006.
Modified: Jul 28, 2006.
Primary publication: Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.

Alkalilimnicola ehrlichei MLHE-1

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008340
Total Bases: 3275944 bp
Number of genes: 2940
Released: Sep 12, 2006.
Modified: Sep 14, 2006.
Primary publication:

Anabaena variabilis ATCC 29413

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007413
Total Bases: 6363727 bp
Number of genes: 5134
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007410
Total Bases: 366354 bp
Number of genes: 350
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007411
Total Bases: 35762 bp
Number of genes: 32
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007412
Total Bases: 300758 bp
Number of genes: 247
Released: Sep 15, 2005.
Modified: Jun 16, 2006.
Primary publication:

Anaeromyxobacter dehalogenans 2CP-C

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007760
Total Bases: 5013479 bp
Number of genes: 4419
Released: Jan 27, 2006.
Modified: Mar 31, 2006.
Primary publication: Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium.

Anaplasma marginale str. St. Maries

Sequenced by: Washington State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004842
Total Bases: 1197687 bp
Number of genes: 1002
Released: Dec 8, 2004.
Modified: Dec 2, 2005.
Primary publication: Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins.

Anaplasma phagocytophilum HZ

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007797
Total Bases: 1471282 bp
Number of genes: 1411
Released: Feb 21, 2006.
Modified: Mar 30, 2006.
Primary publication: Comparative genomics of emerging human ehrlichiosis agents.

Aquifex aeolicus

Sequenced by: DIVERSA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000918
Total Bases: 1551335 bp
Number of genes: 1580
Released: Apr 16, 1998.
Modified: Dec 02, 2005.
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001880
Total Bases: 39456 bp
Number of genes: 31
Released: Apr 16, 1998.
Modified: Apr 03, 2006.
Primary publication: The complete genome of the hyperthermophilic bacterium Aquifex aeolicus

Archaeoglobus fulgidus DSM 4304

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000917
Total Bases: 2178400 bp
Number of genes: 2486
Released: Dec 6, 1997.
Modified: Jan 17, 2006.
Primary publication: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

Arthrobacter sp. FB24

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008541
Total Bases: 4698945 bp
Number of genes: 4241
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008537
Total Bases: 159538 bp
Number of genes: 160
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008538
Total Bases: 115507 bp
Number of genes: 108
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008539
Total Bases: 97488 bp
Number of genes: 96
Released: Oct 24, 2006 .
Modified: Oct 25, 2006 .
Primary publication:

Aster yellows witches'-broom phytoplasma AYWB

Sequenced by: Ohio State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007716
Total Bases: 706569 bp
Number of genes: 706
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007717
Total Bases: 3972 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007718
Total Bases: 4009 bp
Number of genes: 4
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007719
Total Bases: 5104 bp
Number of genes: 7
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007720
Total Bases: 4316 bp
Number of genes: 6
Released: Jan 11, 2006 .
Modified: May 18, 2006 .
Primary publication: Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts.

Azoarcus sp. EbN1

Sequenced by: Max Planck Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006513
Total Bases: 4296230 bp
Number of genes: 4203
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006823
Total Bases: 207355 bp
Number of genes: 274
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006824
Total Bases: 223670 bp
Number of genes: 196
Released: Nov 20, 2004 .
Modified: Jan 17, 2006 .
Primary publication: The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.

Bacillus anthracis str. 'Ames Ancestor'

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007530
Total Bases: 5227419 bp
Number of genes: 5635
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007323
Total Bases: 94830 bp
Number of genes: 113
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007322
Total Bases: 181677 bp
Number of genes: 217
Released: May 20, 2004 .
Modified: Apr 3, 2006.
Primary publication: Genomics of the Bacillus cereus group of organisms.

Bacillus anthracis str. Ames

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003997
Total Bases: 5227293 bp
Number of genes: 5630
Released: May 2, 2003.
Modified: Dec 2, 2005 .
Primary publication: The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.

Bacillus anthracis str. Sterne

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005945
Total Bases: 5228663 bp
Number of genes: 5415
Released: Jun 24, 2004 .
Modified: Apr 3, 2006.
Primary publication: Genomics of the Bacillus cereus group of organisms.

Bacillus cereus ATCC 10987

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003909
Total Bases: 5224283 bp
Number of genes: 5772
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005707
Total Bases: 208369 bp
Number of genes: 242
Released: Feb 13, 2004 .
Modified: Aug 17, 2006 .
Primary publication: The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1.

Bacillus cereus ATCC 14579

Sequenced by: INRA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004722
Total Bases: 5411809 bp
Number of genes: 5476
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004721
Total Bases: 15274 bp
Number of genes: 21
Released: May 2, 2003.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis.

Bacillus cereus E33L

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006274
Total Bases: 5300915 bp
Number of genes: 5269
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007103
Total Bases: 466370 bp
Number of genes: 447
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007104
Total Bases: 5108 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007105
Total Bases: 53501 bp
Number of genes: 57
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007106
Total Bases: 8191 bp
Number of genes: 8
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007107
Total Bases: 9150 bp
Number of genes: 10
Released: Sep 16, 2004.
Modified: DEc 3, 2005.
Primary publication: Genomics of the Bacillus cereus group of organisms.

Bacillus clausii KSM-K16

Sequenced by: Kao Corporation, Biological Science Laboratories, Japan
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006582
Total Bases: 4303871 bp
Number of genes: 4204
Released: Jan 3, 2005.
Modified: Dec 2, 2005.
Primary publication-1: Purification and properties of an alkaline protease from alkalophilic Bacillus sp. KSM-K16.
Primary publication-2: High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism.

Bacillus halodurans C-125

Sequenced by: Japan AMSTEC
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002570
Total Bases: 4202352 bp
Number of genes: 4171
Released: Mar 23, 1999.
Modified: Dec 3, 2005.
Primary publication: 8 publications

Sequenced by: Novozymes Biotech
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006270
Total Bases: 4222334 bp
Number of genes: 4290
Released: Oct 6, 2004.
Modified: Jan 18, 2006.
Primary publication: Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.

Bacillus licheniformis DSM 13

Sequenced by: Gottingen Genomics Laboratory
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006322
Total Bases: bp
Number of genes:
Released: Sep 24, 2004.
Modified: Dec 3, 2005.
Primary publication: The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential.

Bacillus subtilis subsp. subtilis str. 168

Sequenced by: BSNR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000964
Total Bases: 4214630 bp
Number of genes: 4225
Released: Dec 31, 1997.
Modified: Dec 2, 2005.
Primary publication: The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Bacillus thuringiensis serovar konkukian str. 97-27

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005957
Total Bases: 5237682 bp
Number of genes: 5261
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006578
Total Bases: 77112 bp
Number of genes: 80
Released: Jun 30, 2004.
Modified: Apr 3, 2006.
Primary publication-1: Bacillus thuringiensis subsp. konkukian (serotype H34) superinfection: case report and experimental evidence of pathogenicity in immunosuppressed mice.
Primary publication-2: Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis.
Primary publication-3: Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates.

Bacteroides fragilis NCTC 9434

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003228
Total Bases: 5205140 bp
Number of genes: 4347
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006873
Total Bases: 36560 bp
Number of genes: 48
Released: Mar 3, 2005.
Modified: Dec 3, 2005.
Primary publication: Extensive DNA inversions in the B. fragilis genome control variable gene expression.

Bacteroides fragilis YCH46

Sequenced by: Kitasato University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006347
Total Bases: 5277274 bp
Number of genes: 4670
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006297
Total Bases: 33716 bp
Number of genes: 47
Released: Oct 15, 2004.
Modified: Dec 3, 2005.
Primary publication: Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation.

Bacteroides thetaiotaomicron VPI-5482

Sequenced by: Washington University Department of Molecular
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004663
Total Bases: 6260361 bp
Number of genes: 4864
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004703
Total Bases: 33038 bp
Number of genes: 38
Released: Mar 29, 2003.
Modified: Jan 17, 2006.
Primary publication: A genomic view of the human-Bacteroides thetaiotaomicron symbiosis.

Bartonella henselae str. Houston-1

Sequenced by: Uppsala University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005956
Total Bases: 1931047 bp
Number of genes: 1665
Released: Jun 24, 2004.
Modified: Dec 3, 2005.
Primary publication: The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae.

Bartonella quintana str. Toulouse

Sequenced by: Uppsala University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005955
Total Bases: 1581384 bp
Number of genes: 1356
Released: Jun 24, 2004.
Modified: Dec 3, 2005.
Primary publication: The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae.

Baumannia cicadellinicola str. Hc (Homalodisca coagulata)

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007984
Total Bases: 686194 bp
Number of genes: 651
Released: Apr 27, 2006.
Modified: May 5, 2006.
Primary publication: Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters.

Bdellovibrio bacteriovorus HD100

Sequenced by: Max-Planck-Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005363
Total Bases: bp
Number of genes:
Released: Jan 31, 2004.
Modified: Dec 3, 2005.
Primary publication: A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective.

Bifidobacterium longum NCC2705

Sequenced by: Nestle Research Center, Switzerland
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004307
Total Bases: 2256640 bp
Number of genes: 1798
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004943
Total Bases: 3626 bp
Number of genes: 2
Released: Oct 17, 2002.
Modified: Jan 17, 2006.
Primary publication: The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Bordetella bronchiseptica RB50

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002927
Total Bases: 5339179 bp
Number of genes: 5072
Released: Aug 12, 2003.
Modified: Jan 18, 2006.
Primary publication: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Bordetella parapertussis 12822

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002928
Total Bases: 4773551 bp
Number of genes: 4467
Released: Aug 12, 2003.
Modified: Jan 18, 2006.
Primary publication: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Bordetella pertussis Tohama I

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002929
Total Bases: 4086189 bp
Number of genes: 3867
Released: Aug 12, 2003.
Modified: Jan 18, 2006.
Primary publication: Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Borrelia afzelii PKo

Sequenced by: Fritz Lipmann Institute, Germany, Jena
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008277
Total Bases: 905394 bp
Number of genes: 894
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008564
Total Bases: 59958 bp
Number of genes: 75
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008565
Total Bases: 59804 bp
Number of genes: 59
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008566
Total Bases: 34273 bp
Number of genes: 36
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008567
Total Bases: 32368 bp
Number of genes: 55
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008568
Total Bases: 28533 bp
Number of genes: 34
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008569
Total Bases: 24794 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008273
Total Bases: 30017 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008273
Total Bases: 30017 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008274
Total Bases: 26533 bp
Number of genes: 28
Released: Jul 31, 2006.
Modified: Aug 2, 2006.
Primary publication: Monoclonal antibodies for identification of Borrelia afzelii sp. nov. associated with late cutaneous manifestations of Lyme borreliosis.

Borrelia burgdorferi B31

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001318
Total Bases: 910724 bp
Number of genes: 875
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001904
Total Bases: 9386 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001903
Total Bases: 26498 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000948
Total Bases: 30750 bp
Number of genes: 42
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000949
Total Bases: 30223 bp
Number of genes: 45
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000950
Total Bases: 30299 bp
Number of genes: 44
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000951
Total Bases: 29838 bp
Number of genes: 42
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000952
Total Bases: 30800 bp
Number of genes: 44
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000953
Total Bases: 30885 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000954
Total Bases: 30651 bp
Number of genes: 38
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000957
Total Bases: 5228 bp
Number of genes: 6
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000955
Total Bases: 18753 bp
Number of genes: 12
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000956
Total Bases: 52971 bp
Number of genes: 82
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001849
Total Bases: 16823 bp
Number of genes: 25
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001850
Total Bases: 24177 bp
Number of genes: 32
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001851
Total Bases: 26921 bp
Number of genes: 32
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001852
Total Bases: 29766 bp
Number of genes: 34
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001853
Total Bases: 28601 bp
Number of genes: 40
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001854
Total Bases: 27323 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001855
Total Bases: 36849 bp
Number of genes: 54
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001856
Total Bases: 38829 bp
Number of genes: 52
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001857
Total Bases: 53561 bp
Number of genes: 76
Released: Dec 24, 1997.
Modified: Dec 2, 2005.
Primary publication: Cross-species hybridization of a Borrelia burgdorferi DNA array reveals infection- and culture-associated genes of the unsequenced genome of the relapsing fever agent Borrelia hermsii.

Borrelia garinii PBi

Sequenced by: Institute for Molecular Biotechnology, Germany
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006156
Total Bases: 904246 bp
Number of genes: 869
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006128
Total Bases: 27108 bp
Number of genes: 26
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006129
Total Bases: 55560 bp
Number of genes: 74
Released: Nov 18, 2004.
Modified: Apr 3, 2006.
Primary publication: Comparative analysis of the Borrelia garinii genome.

Bradyrhizobium japonicum USDA 110

Sequenced by: Kazusa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004463
Total Bases: 9105828 bp
Number of genes: 8373
Released: Feb 25, 2003.
Modified: Mar 24, 2006.
Primary publication: Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110.

Brucella abortus biovar 1 str. 9-941

Sequenced by: University of Minnesota
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006932
Total Bases: 2124241 bp
Number of genes: 2200
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006933
Total Bases: 1162204 bp
Number of genes: 1156
Released: Apr 5, 2005.
Modified: Jan 18, 2006.
Primary publication: Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis.

Brucella melitensis 16M

Sequenced by: Integrated Genomics
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003317
Total Bases: 2117144 bp
Number of genes: 2107
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003318
Total Bases: 1177787 bp
Number of genes: 1157
Released: Jan 5, 2002.
Modified: Dec 2, 2005.
Primary publication-1: The genome sequence of the facultative intracellular pathogen Brucella melitensis.
Primary publication-2: The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts.

Brucella melitensis biovar Abortus 2308

Sequenced by: Oak Ridge National Laboratory
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007618
Total Bases: 2121359 bp
Number of genes: 2236
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007624
Total Bases: 1156948 bp
Number of genes: 1182
Released: Nov 22, 2005.
Modified: Jan 18, 2006.
Primary publication: Whole-genome analyses of speciation events in pathogenic Brucellae.

Brucella suis 1330

Sequenced by: NITE/TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004310
Total Bases: 2107794 bp
Number of genes: 2231
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004311
Total Bases: 1207381 bp
Number of genes: 1220
Released: Sep 25, 2002.
Modified: Dec 2, 2005.
Primary publication: The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts.

Buchnera aphidicola str. APS (Acyrthosiphon pisum)

Sequenced by: Rikken GSC, Japan
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002528
Total Bases: 640681 bp
Number of genes: 607
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002253
Total Bases: 7786 bp
Number of genes: 7
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002252
Total Bases: 7258 bp
Number of genes: 4
Released: Sep 19, 2000.
Modified: Jan 9, 2006.
Primary publication: Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS.

Buchnera aphidicola str. Bp (Baizongia pistaciae)

Sequenced by: Valencia University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004545
Total Bases: 615980 bp
Number of genes: 550
Released: Jan 11, 2003.
Modified: Dec 2, 2005.
Primary publication: Reductive genome evolution in Buchnera aphidicola.

Buchnera aphidicola str. Cc (Cinara cedri)

Sequenced by: Valencia University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: 416380 bp
Number of genes: 397
Released: Oct 18, 2006.
Modified: Oct 25, 2006.
Primary publication: A small microbial genome: the end of a long symbiotic relationship?

Buchnera aphidicola str. Sg (Schizaphis graminum)

Sequenced by: Uppsala University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004061
Total Bases: 641454 bp
Number of genes: 619
Released: Jun 29, 2002.
Modified: Apr 3, 2006.
Primary publication: 50 million years of genomic stasis in endosymbiotic bacteria.

Burkholderia cenocepacia AU 1054

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008060
Total Bases: 3294563 bp
Number of genes: 3054
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008061
Total Bases: 2788459 bp
Number of genes: 2504
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008062
Total Bases: 1196094 bp
Number of genes: 1074
Released: Jun 1, 2006.
Modified: Jun 5, 2006.
Primary publication:

Burkholderia cenocepacia HI2424

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008542
Total Bases: 3483902 bp
Number of genes: 3238
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008545
Total Bases: 164857 bp
Number of genes: 159
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008543
Total Bases: 2998664 bp
Number of genes: 2707
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008544
Total Bases: 1055417 bp
Number of genes: 927
Released: Oct 25, 2006.
Modified: Oct 26, 2006.
Primary publication: An epidemic Burkholderia cepacia complex strain identified in soil.

Burkholderia cepacia AMMD

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008390
Total Bases: 3556545 bp
Number of genes: 3294
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008391
Total Bases: 2646969 bp
Number of genes: 2364
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008392
Total Bases: 1281472 bp
Number of genes: 1021
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008385
Total Bases: 43581 bp
Number of genes: 45
Released: Sep 21, 2006.
Modified: Sep 27, 2006.
Primary publication: Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates.

Burkholderia mallei ATCC 23344

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006349
Total Bases: 2325379 bp
Number of genes: 2115
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006348
Total Bases: 3510148 bp
Number of genes: 3394
Released: Sep 21, 2004.
Modified: Jan 18, 2006.
Primary publication: Structural flexibility in the Burkholderia mallei genome.

Burkholderia pseudomallei 1710b

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007434
Total Bases: 4126292 bp
Number of genes: 3799
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007435
Total Bases: 3181762 bp
Number of genes: 2621
Released: Sep 30, 2005.
Modified: Apr 3, 2006.
Primary publication:

Burkholderia pseudomallei K96243

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006350
Total Bases: 4074542 bp
Number of genes: 3529
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006351
Total Bases: 3173005 bp
Number of genes: 2406
Released: Sep 21, 2004.
Modified: Dec 3, 2005.
Primary publication: Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.

Burkholderia sp. 383

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007509
Total Bases: 1395069 bp
Number of genes: 1221
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007511
Total Bases: 3587082 bp
Number of genes: 3189
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007510
Total Bases: 3694126 bp
Number of genes: 3416
Released: Apr 2, 2004.
Modified: Apr 3, 2006.
Primary publication:

Burkholderia thailandensis E264

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007650
Total Bases: 2914771 bp
Number of genes: 2371
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007651
Total Bases: 3809201 bp
Number of genes: 3343
Released: Dec 15, 2005.
Modified: Jan 18, 2006.
Primary publication: Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies.

Burkholderia xenovorans LB400

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007952
Total Bases: 3363523 bp
Number of genes: 3046
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007953
Total Bases: 1471779 bp
Number of genes: 1388
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007951
Total Bases: 4895836 bp
Number of genes: 4609
Released: Apr 10, 2006.
Modified: Apr 13, 2006.
Primary publication:

Campylobacter jejuni RM1221

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003912
Total Bases: 1777831 bp
Number of genes: 1937
Released: Jan 7, 2005.
Modified: Dec 2, 2005.
Primary publication: Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.

Campylobacter jejuni subsp. jejuni NCTC 11168

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002163
Total Bases: 1641481 bp
Number of genes: 1705
Released: Feb 25, 2000.
Modified: Jan 17, 2006.
Primary publication: The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences.

Candidatus Blochmannia floridanus

Sequenced by: University of Valencia
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005061
Total Bases: 705557 bp
Number of genes: 631
Released: Jul 30, 2003.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes.

Candidatus Blochmannia pennsylvanicus str. BPEN

Sequenced by: Josephine Bay Paul Center
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007292
Total Bases: 791654 bp
Number of genes: 658
Released: Aug 4, 2005.
Modified: Dec 3, 2005.
Primary publication: Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.

Candidatus Carsonella ruddii PV

Sequenced by: Kitasato Institute for Life Sciences
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008512
Total Bases: 159662 bp
Number of genes: 213
Released: Oct 16, 2006.
Modified: Oct 22, 2006.
Primary publication: The 160-kilobase genome of the bacterial endosymbiont Carsonella.

Candidatus Pelagibacter ubique HTCC1062

Sequenced by: Oregon State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007205
Total Bases: 1308759 bp
Number of genes: 1389
Released: Jul 22, 2005.
Modified: Jan 25, 2006.
Primary publication: Genome streamlining in a cosmopolitan oceanic bacterium.

Candidatus Protochlamydia amoebophila UWE25

Sequenced by: University of Vienna, Austria
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005861
Total Bases: 2414465 bp
Number of genes: 2075
Released: Apr 10, 2004.
Modified: Dec 19, 2005.
Primary publication: lluminating the evolutionary history of chlamydiae.

Carboxydothermus hydrogenoformans Z-2901

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007503
Total Bases: 2401520 bp
Number of genes: 2707
Released: Oct 21, 2005.
Modified: Mar 30, 2006.
Primary publication: Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.

Caulobacter crescentus CB15

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002696
Total Bases: 4016947 bp
Number of genes: 3819
Released: Mar 22, 2001.
Modified: Jan 20, 2006.
Primary publication: Complete genome sequence of Caulobacter crescentus.

Chlamydia muridarum Nigg

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002620
Total Bases: 1072950 bp
Number of genes: 955
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002182
Total Bases: 7501 bp
Number of genes: 7
Released: Feb 24, 2000.
Modified: Jan 9, 2006.
Primary publication: Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

Chlamydia trachomatis A/HAR-13

Sequenced by: Lab of Human Bacterial Pathogenesis
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007429
Total Bases: 1044459 bp
Number of genes: 953
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007430
Total Bases: 7510 bp
Number of genes: 8
Released: Sep 23, 2005.
Modified: Mar 30, 2006.
Primary publication: Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains.

Chlamydia trachomatis D/UW-3/CX

Sequenced by: Stanford University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000117
Total Bases: 1042519 bp
Number of genes: 940
Released: Oct 23, 1998.
Modified: Jan 18, 2006.
Primary publication: Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.

Chlamydophila abortus S26/3

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004552
Total Bases: 1144377 bp
Number of genes: 1003
Released: Apr 1, 2005.
Modified: Sep 14, 2006.
Primary publication: The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.

Chlamydophila caviae GPIC

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003361
Total Bases: 1173390 bp
Number of genes: 1053
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004720
Total Bases: 7966 bp
Number of genes: 7
Released: Apr 12, 2003.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.

Chlamydophila felis Fe/C-56

Sequenced by: Japanese Consortium/Yamaguchi University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007899
Total Bases: 1166239 bp
Number of genes: 1046
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007900
Total Bases: 7552 bp
Number of genes: 8
Released: Mar 9, 2006.
Modified: Mar 16, 2006.
Primary publication:

Chlamydophila pneumoniae AR39

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002179
Total Bases: 1229853 bp
Number of genes: 1167
Released: Feb 24, 2000.
Modified: Jan 6, 2006.
Primary publication: Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.

Chlamydophila pneumoniae CWL029

Sequenced by: ChGP
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000922
Total Bases: 1230230 bp
Number of genes: <1122/li>
Released: Apr 7, 1999.
Modified: May 3, 2006.
Primary publication: Comparative genomes of Chlamydia pneumoniae and C. trachomatis.

Chlamydophila pneumoniae J138

Sequenced by: Yamaguchi/Kyushu University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002491
Total Bases: 1226565 bp
Number of genes: 1107
Released: Jun 28, 2000.
Modified: Jan 17, 2006.
Primary publication: Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA.

Chlamydophila pneumoniae TW-183

Sequenced by: ALTANA Pharma
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005043
Total Bases: 1225935 bp
Number of genes: 1155
Released: Jul 25, 2003.
Modified: Jan 16, 2006.
Primary publication:

Chlorobium chlorochromatii CaD3

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007514
Total Bases: 2572079 bp
Number of genes: 2047
Released: Oct 26, 2005.
Modified: Mar 30, 2006.
Primary publication: Physiology and tactic response of the phototrophic consortium "Chlorochromatium aggregatum"

Chlorobium tepidum TLS

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002932
Total Bases: 2154946 bp
Number of genes: 2344
Released: Jul 3, 2002.
Modified: Dec 2, 2005.
Primary publication: The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.

Chromobacterium violaceum ATCC 12472

Sequenced by: LNCC, Brazil
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005085
Total Bases: 4751080 bp
Number of genes: 4529
Released: Sep 23, 2003.
Modified: Apr 3, 2006.
Primary publication: The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability.

Chromohalobacter salexigens DSM 3043

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007963
Total Bases: 3696649 bp
Number of genes: 3409
Released: Apr 11, 2006.
Modified: Apr 17, 2006.
Primary publication:

Clostridium acetobutylicum ATCC 824

Sequenced by: Oscient Genome Therapeutics
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003030
Total Bases: 3940880 bp
Number of genes: 3844
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001988
Total Bases: 192000 bp
Number of genes: 178
Released: Jul 24, 2001.
Modified: Jan 18, 2006.
Primary publication: Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.

Clostridium perfringens ATCC 13124

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008261
Total Bases: 3256683 bp
Number of genes: 3016
Released: Jul 25, 2006.
Modified: Jul 28, 2006.
Primary publication: Molecular genetics and pathogenesis of Clostridium perfringens.

Clostridium perfringens SM101

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008262
Total Bases: 2897393 bp
Number of genes: 2671
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008263
Total Bases: 12397 bp
Number of genes: 10
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008264
Total Bases: 12206 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008265
Total Bases: 38092 bp
Number of genes: 54
Released: Jul 26, 2006.
Modified: Oct 4, 2006.
Primary publication: Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens.

Clostridium perfringens str. 13

Sequenced by: University Kyushu
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003366
Total Bases: 3031430bp
Number of genes: 2786
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003042
Total Bases: 54310 bp
Number of genes: 63
Released: Jan 17, 2002.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.

Clostridium tetani E88

Sequenced by: Goettingen Genomics Laboratory
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004557
Total Bases: 2799251 bp
Number of genes: 2445
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004565
Total Bases: 74082 bp
Number of genes: 61
Released: Jan 29, 2003.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of Clostridium tetani, the causative agent of tetanus disease.

Colwellia psychrerythraea 34H

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003910
Total Bases: 5373180 bp
Number of genes: 5054
Released: Jul 26, 2005.
Modified: Jan 17, 2006.
Primary publication: The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.

Corynebacterium diphtheriae NCTC 13129

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002935
Total Bases: 2488635 bp
Number of genes: 2389
Released: Nov 7, 2003.
Modified: Dec 3, 2005.
Primary publication: The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.

Corynebacterium efficiens YS-314

Sequenced by: NITE
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004369
Total Bases: 3147090 bp
Number of genes: 3020
Released: Jul 4, 2003.
Modified: Dec 2, 2005.
Primary publication: Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.

Corynebacterium glutamicum ATCC 13032 Kitasato

Sequenced by: Kitasato University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: 3309401 bp
Number of genes: 3074
Released: Sep 2, 2003.
Modified: Jan 6, 2006.
Primary publication: The Corynebacterium glutamicum genome: features and impacts on biotechnological processes.

Corynebacterium glutamicum ATCC 13032 Bielefeld

Sequenced by: Universitaet Bielefeld
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006958
Total Bases: 3282708 bp
Number of genes: 3138
Released: Jan 26, 2004.
Modified: Jan 17, 2006.
Primary publication: The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.

Corynebacterium jeikeium K411

Sequenced by: Bielefeld University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007164
Total Bases: 2462499 bp
Number of genes: 2165
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003080
Total Bases: 14323 bp
Number of genes: 16
Released: Jun 27, 2005.
Modified: Mar 30, 2006.
Primary publication: Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.

Coxiella burnetii RSA 493

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002971
Total Bases: 1995281 bp
Number of genes: 2143
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004704
Total Bases: 37393 bp
Number of genes: 40
Released: Apr 22, 2003.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence of the Q-fever pathogen Coxiella burnetii.

Cytophaga hutchinsonii ATCC 33406

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008255
Total Bases: 4433218 bp
Number of genes: 3837
Released: Jul 11, 2006.
Modified: Jul 25, 2006.
Primary publication:

Dechloromonas aromatica RCB

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007298
Total Bases: 4501104 bp
Number of genes: 4283
Released: Aug 5, 2005.
Modified: Apr 4, 2006.
Primary publication: Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas.

Dehalococcoides ethenogenes 195

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002936
Total Bases: 1469720 bp
Number of genes: 1642
Released: Jan 7, 2005.
Modified: Apr 3, 2006.
Primary publication: Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.

Dehalococcoides sp. CBDB1

Sequenced by: Max Planck Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007356
Total Bases: 1395502 bp
Number of genes: 1510
Released: Aug 19, 2005.
Modified: Dec 3, 2005.
Primary publication-1: Bacterial dehalorespiration with chlorinated benzenes.
Primary publication-2: Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium.

Deinococcus geothermalis DSM 11300

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008025
Total Bases: 2467205 bp
Number of genes: 2411
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008010
Total Bases: 574127 bp
Number of genes: 530
Released: May 4, 2006.
Modified: May 9, 2006.
Primary publication:

Deinococcus radiodurans R1

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001263
Total Bases: 2648638 bp
Number of genes: 2687
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001264
Total Bases: 412348 bp
Number of genes: 369
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000958
Total Bases: 177466 bp
Number of genes: 148
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000959
Total Bases: 45704 bp
Number of genes: 40
Released: Nov 24, 1999.
Modified: Dec 3, 2005.
Primary publication-1: Engineering Deinococcus radiodurans for metal remediation in radioactive mixed waste environments.
Primary publication-2: Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.
Primary publication-3: Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.

Desulfitobacterium hafniense Y51

Sequenced by: Research Institute of Innovative
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007907
Total Bases: 5727534 bp
Number of genes: 5137
Released: Mar 9, 2006.
Modified: Apr 3, 2006.
Primary publication: Complete genome sequence of the dehalorespiring bacterium Desulfitobacterium hafniense Y51 and comparison with Dehalococcoides ethenogenes 195.

Desulfotalea psychrophila LSv54

Sequenced by: e.gene Biotechnologie GmbH
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006138
Total Bases: 3523383 bp
Number of genes: 3204
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006139
Total Bases: 121587 bp
Number of genes: 101
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006140
Total Bases: bp
Number of genes:
Released: Aug 13, 2004.
Modified: Dec 2, 2005.
Primary publication: The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments.

Desulfovibrio desulfuricans G20

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007519
Total Bases: 3730232 bp
Number of genes: 3865
Released: Oct 28, 2005.
Modified: Apr 4, 2006.
Primary publication:

Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002937
Total Bases: 3570858 bp
Number of genes: 3480
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005863
Total Bases: 202301 bp
Number of genes: 153
Released: Apr 13, 2004.
Modified: Jan 17, 2006.
Primary publication: The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Ehrlichia canis str. Jake

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007354
Total Bases: 1315030 bp
Number of genes: 984
Released: Aug 12, 2005.
Modified: Apr 3, 2006.
Primary publication:

Ehrlichia chaffeensis str. Arkansas

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007799
Total Bases: 1176248 bp
Number of genes: 1158
Released: Feb 21, 2006.
Modified: Mar 30, 2006.
Primary publication: Comparative genomics of emerging human ehrlichiosis agents.

Ehrlichia ruminantium str. Gardel

Sequenced by: CIRAD, France
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006831
Total Bases: 1499920 bp
Number of genes: 989
Released: Feb 4, 2005.
Modified: May 23, 2006.
Primary publication: Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity.

Ehrlichia ruminantium Welgevonden

Sequenced by: University of Pretoria, South Africa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005295
Total Bases: 1516355 bp
Number of genes: 961
Released: Feb 4, 2005.
Modified: May 22, 2006.
Primary publication-1: Genome size and genetic map of Cowdria ruminantium
Primary publication-2: The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number.

Enterococcus faecalis V583

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004668
Total Bases: 3218031 bp
Number of genes: 3258
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004669
Total Bases: 66320 bp
Number of genes: 74
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004671
Total Bases: 57660 bp
Number of genes: 62
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004670
Total Bases: 17963 bp
Number of genes: 19
Released: Mar 29, 2003.
Modified: Dec 2, 2005.
Primary publication: Modulation of virulence within a pathogenicity island in vancomycin-resistant Enterococcus faecalis.

Erwinia carotovora subsp. atroseptica SCRI1043

Sequenced by: Sanger Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004547
Total Bases: 5064019 bp
Number of genes: 4614
Released: Jul 21, 2004.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.

Erythrobacter litoralis HTCC2594

Sequenced by: The Gordon and Betty Moore Foundation Marine Microbiology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007722
Total Bases: 3052398 bp
Number of genes: 3056
Released: Jan 11, 2006.
Modified: Mar 30, 2006.
Primary publication: Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov.

Escherichia coli 536

Sequenced by: University of Goettingen
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008253
Total Bases: 4938920 bp
Number of genes: 4789
Released: Jul 13, 2006.
Modified: Jul 25, 2006.
Primary publication-1: Genetic structure and distribution of four pathogenicity islands (PAI I(536) to PAI IV(536)) of uropathogenic Escherichia coli strain 536.
Primary publication-2: Instability of pathogenicity islands in uropathogenic Escherichia coli 536.
Primary publication-3: The pathogenicity island-associated K15 capsule determinant exhibits a novel genetic structure and correlates with virulence in uropathogenic Escherichia coli strain 536.

Escherichia coli APEC O1

Sequenced by: Iowa State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008563
Total Bases: 5082025 bp
Number of genes: 4561
Released: Oct 4, 2006.
Modified: Nov 8, 2006.
Primary publication:

Escherichia coli CFT073

Sequenced by: Univ. Wisconsin
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004431
Total Bases: 5231428 bp
Number of genes: 5589
Released: Dec 10, 2002.
Modified: Apr 4, 2006.
Primary publication: Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

Escherichia coli K12

Sequenced by: Univ. Wisconsin
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000913
Total Bases: 4639675 bp
Number of genes: 4488
Released: Sep 5, 1997.
Modified: Sep 22, 2006.
Primary publication-1: The complete genome sequence of Escherichia coli K-12.
Primary publication-2: Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Escherichia coli O157:H7 EDL933

Sequenced by: Univ. Wisconsin
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002655
Total Bases: 5528445 bp
Number of genes: 5453
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007414
Total Bases: 92077 bp
Number of genes: 101
Released: Feb 24, 2001.
Modified: Jul 19, 2006.
Primary publication: Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Escherichia coli O157:H7 str. Sakai

Sequenced by: GIRC
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002695
Total Bases: 5498450 bp
Number of genes: 5395
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002128
Total Bases: 92721 bp
Number of genes: 85
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002127
Total Bases: 3306 bp
Number of genes: 3
Released: Mar 29, 2000.
Modified: May 23, 2006.
Primary publication-1: Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.
Primary publication-2: Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak.
Primary publication-3: Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak.
Primary publication-4: Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655.

Escherichia coli UTI89

Sequenced by: Washington University (WashU)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007946
Total Bases: 5065741 bp
Number of genes: 5176
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007941
Total Bases: 114230 bp
Number of genes: 145
Released: Apr 5, 2006.
Modified: Apr 18, 2006.
Primary publication: Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.

Escherichia coli W3110

Sequenced by: Nara Institute of Science and Technology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: AC_000091
Total Bases: 4646332 bp
Number of genes: 4444
Released: Jan 23, 2006.
Modified: Apr 12, 2006.
Primary publication: Nucleotide sequence of the operator-promoter region of the galactose operon of Escherichia coli.

Francisella tularensis subsp. holarctica

Sequenced by: LLNL
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007880
Total Bases: 1895994 bp
Number of genes: 2019
Released: Mar 2, 2006.
Modified: Mar 30, 2006.
Primary publication: Efficacy of the live attenuated Francisella tularensis vaccine (LVS) in a murine model of disease.

Francisella tularensis subsp. holarctica OSU18

Sequenced by: Baylor College of Medicine
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008369
Total Bases: 1895727 bp
Number of genes: 1932
Released: Sep 20, 2006.
Modified: Sep 25, 2006.
Primary publication: Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence.

Francisella tularensis subsp. tularensis FSC 198

Sequenced by: University of Birmingham
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008245
Total Bases: 1892616 bp
Number of genes: 1852
Released: Jul 12, 2006.
Modified: Jul 25, 2006.
Primary publication:

Francisella tularensis subsp. tularensis Schu S4

Sequenced by: Swedish Defence Research
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006570
Total Bases: 1892819 bp
Number of genes: 1852
Released: Dec 17, 2004.
Modified: Jan 17, 2006.
Primary publication: Preliminary analysis and annotation of the partial genome sequence of Francisella tularensis strain Schu 4.

Frankia alni ACN14a

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008278
Total Bases: 7497934 bp
Number of genes: 6786
Released: Aug 3, 2006.
Modified: Sep 13, 2006.
Primary publication:

Frankia sp. CcI3

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007777
Total Bases: 5433628 bp
Number of genes: 4618
Released: Feb 6, 2006.
Modified: Mar 30, 2006.
Primary publication:

Fusobacterium nucleatum subsp. nucleatum ATCC 25586

Sequenced by: Integrated Genomics
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003454
Total Bases: 2174500 bp
Number of genes: 2129
Released: Mar 13, 2002.
Modified: Dec 2, 2005.
Primary publication: Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.

Geobacillus kaustophilus HTA426

Sequenced by: JAMSTEC
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006510
Total Bases: 3544776 bp
Number of genes: 3612
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006509
Total Bases: 47890 bp
Number of genes: 42
Released: Dec 4, 2004.
Modified: Jan 18, 2006.
Primary publication: Genomic characterization of thermophilic Geobacillus species isolated from the deepest sea mud of the Mariana Trench.

Geobacter metallireducens GS-15

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007517
Total Bases: 3997420 bp
Number of genes: 3621
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007515
Total Bases: 13762 bp
Number of genes: 13
Released: Oct 27, 2005.
Modified: Apr 13, 2006.
Primary publication: Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis.

Geobacter sulfurreducens PCA

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002939
Total Bases: 3814139 bp
Number of genes: 3528
Released: Dec 13, 2003.
Modified: Jan 18, 2006.
Primary publication: Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.

Gloeobacter violaceus PCC 7421

Sequenced by: Kazusa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_051250
Total Bases: 4659019 bp
Number of genes: 4482
Released: Nov 19, 2003.
Modified: Dec 3, 2005.
Primary publication-1: Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids.
Primary publication-2: Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids (supplement).

Gluconobacter oxydans 621H

Sequenced by: Gottingen Genom. Lab.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006677
Total Bases: 2702173 bp
Number of genes: 2499
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006672
Total Bases: 163186 bp
Number of genes: 163
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006673
Total Bases: 26568 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006674
Total Bases: 14547 bp
Number of genes: 18
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006675
Total Bases: 13223 bp
Number of genes: 18
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006676
Total Bases: 2687 bp
Number of genes: 4
Released: Jan 24, 2005.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans.

Granulibacter bethesdensis CGDNIH1

Sequenced by: Rocky Mountain Laboratories, National Institutes of Allergy and Infectious Disease, The National Institutes of Health
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008343
Total Bases: 2708355 bp
Number of genes: 2498
Released: Sep 13, 2006.
Modified: Sep 15, 2006.
Primary publication: A novel bacterium associated with lymphadenitis in a patient with chronic granulomatous disease.

Haemophilus ducreyi 35000HP

Sequenced by: University Ohio
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002940
Total Bases: 1698955 bp
Number of genes: 1838
Released: Jul 23, 2003.
Modified: Apr 3, 2006.
Primary publication:

Haemophilus influenzae 86-028NP

Sequenced by: Columbus Children's Research Institute and The Ohio State University, Pediatrics, USA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007146
Total Bases: 1913428 bp
Number of genes: 1898
Released: Apr 23, 2004.
Modified: Jan 18, 2006.
Primary publication: Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20.

Haemophilus influenzae Rd KW20

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000907
Total Bases: 1830138 bp
Number of genes: 1788
Released: Jul 28, 1995.
Modified: Dec 13, 2005.
Primary publication: Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

Haemophilus somnus 129PT

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008309
Total Bases: 2007700 bp
Number of genes: 1867
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006298
Total Bases: 5178 bp
Number of genes: 6
Released: Aug 22, 2006.
Modified: Aug 30, 2006.
Primary publication:

Hahella chejuensis KCTC 2396

Sequenced by: Korea Research Institute of Bioscience and Biotechnology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007645
Total Bases: 7215267 bp
Number of genes: 6863
Released: Dec 14, 2005.
Modified: Mar 30, 2006.
Primary publication: Genomic blueprint of Hahella chejuensis, a marine microbe producing an algicidal agent.

Haloarcula marismortui ATCC 43049

Sequenced by: Institute for Systems Biology
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006396
Total Bases: 3131724 bp
Number of genes: 3186
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006397
Total Bases: 288050 bp
Number of genes: 285
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006389
Total Bases: 33303 bp
Number of genes: 36
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006390
Total Bases: 33452 bp
Number of genes: 42
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006391
Total Bases: 39521 bp
Number of genes: 40
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006392
Total Bases: 50060 bp
Number of genes: 51
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006393
Total Bases: 132678 bp
Number of genes: 131
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006394
Total Bases: 155300 bp
Number of genes: 167
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006395
Total Bases: 155300 bp
Number of genes: 9
Released: Nov 3, 2004.
Modified: Jan 18, 2006.
Primary publication: Low-pass sequencing for microbial comparative genomics.

Halobacterium sp. NRC-1

Sequenced by: University of Massachusetts-Amherst, University of Washington
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002607
Total Bases: 2014239 bp
Number of genes: 2127
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002608
Total Bases: 365425 bp
Number of genes: 371
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001869
Total Bases: 191346 bp
Number of genes: 176
Publications: 10 Publications
Released: Oct 1, 2000.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of Halobacterium species NRC-1.

Haloquadratum walsbyi DSM 16790

Sequenced by: Max Planck Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008212
Total Bases: 3132494 bp
Number of genes: 2875
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008213
Total Bases: 46867 bp
Number of genes: 39
Released: Jun 22, 2006.
Modified: Aug 24, 2006.
Primary publication-1: The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity.
Primary publication-2: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16820057&dopt=Abstract
Primary publication-3: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=16332346&dopt=Abstract
Primary publication-4: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=15560825&dopt=Abstract

Helicobacter acinonychis str. Sheeba

Sequenced by: Penn State University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008229
Total Bases: 1553927 bp
Number of genes: 1654
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008230
Total Bases: 3661 bp
Number of genes: 6
Released: Jun 28, 2006.
Modified: Jul 1, 2006.
Primary publication-1: Helicobacter acinonychis: genetic and rodent infection studies of a Helicobacter pylori-like gastric pathogen of cheetahs and other big cats.
Primary publication-2: Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis.

Helicobacter hepaticus ATCC 51449

Sequenced by: University Wuerzburg
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004917
Total Bases: 1799146 bp
Number of genes: 1915
Released: Jun 18, 2003.
Modified: Dec 2, 2005.
Primary publication: The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus.

Helicobacter pylori 26695

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000915
Total Bases: 1667867 bp
Number of genes: 1630
Released: Aug 7, 1997.
Modified: Jan 17, 2006.
Primary publication: The complete genome sequence of the gastric pathogen Helicobacter pylori.

Helicobacter pylori HPAG1

Sequenced by: Washington University (WashU)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008086
Total Bases: 1596366 bp
Number of genes: 1578
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008087
Total Bases: 9370 bp
Number of genes: 8
Released: Jun 6, 2006.
Modified: Jun 23, 2006.
Primary publication: The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression.

Helicobacter pylori J99

Sequenced by: ASTRA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000921
Total Bases: 1643831 bp
Number of genes: 1495
Released: Jan 29, 1999.
Modified: Dec 2, 2005.
Primary publication: Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.

Hyphomonas neptunium ATCC 15444

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008358
Total Bases: 3705021 bp
Number of genes: 3569
Released: Sep 18, 2006.
Modified: Sep 19, 2006.
Primary publication: Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.

Idiomarina loihiensis L2TR

Sequenced by: University of Hawaii at Manoa
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006512
Total Bases: 2839318 bp
Number of genes: 2707
Released: Dec 2, 2004.
Modified: Dec 3, 2005.
Primary publication: Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.

Jannaschia sp. CCS1

Sequenced by: DOE Joint Genome Institute
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007802
Total Bases: 4317977 bp
Number of genes: 4265
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007801
Total Bases: 86072 bp
Number of genes: 71
Released: Feb 27, 2006.
Modified: Mar 30, 2006.
Primary publication:

Lactobacillus acidophilus NCFM

Sequenced by: Cal Poly. San Luis Obispo
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006814
Total Bases: 1993564 bp
Number of genes:
Released: Jan 31, 2005.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM.

Lactobacillus brevis ATCC 367

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008497
Total Bases: 2291220 bp
Number of genes: 2314
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008498
Total Bases: 13413 bp
Number of genes: 12
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008499
Total Bases: 35595 bp
Number of genes: 25
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactobacillus casei ATCC 334

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008526
Total Bases: 2895264 bp
Number of genes: 2909
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008502
Total Bases: 29061 bp
Number of genes: 20
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842

Sequenced by: Genoscope
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008054
Total Bases: 1864998 bp
Number of genes: 2217
Released: May 26, 2006.
Modified: June 13, 2006.
Primary publication: The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution.

Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008529
Total Bases: 1856951 bp
Number of genes: 2040
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactobacillus gasseri ATCC 33323

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008530
Total Bases: 1894360 bp
Number of genes: 1898
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: omparative genomics of the lactic acid bacteria.

Lactobacillus johnsonii NCC 533

Sequenced by: Nestle Research Center, Switzerland
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005362
Total Bases: bp
Number of genes:
Released: Feb 18, 2004.
Modified: Feb 6, 2006.
Primary publication: The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533.

Lactobacillus plantarum WCFS1

Sequenced by: Wageningen Centre for Food Sciences
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004567
Total Bases: 3308274 bp
Number of genes: 3136
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006375
Total Bases: 1917 bp
Number of genes: 3
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006376
Total Bases: 2365 bp
Number of genes: 4
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006377
Total Bases: 36069 bp
Number of genes: 43
Released: Feb 5, 2003.
Modified: Jan 9, 2006.
Primary publication: Complete genome sequence of Lactobacillus plantarum WCFS1.

Lactobacillus sakei subsp. sakei 23K

Sequenced by: Institut National de la Recherche Agronomique (INRA)
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007576
Total Bases: 1884661 bp
Number of genes: 1963
Released: Nov 2, 2005.
Modified: Aug 3, 2006.
Primary publication: The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K.

Lactobacillus salivarius subsp. salivarius UCC118

Sequenced by: University College Cork
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007929
Total Bases: 1827111 bp
Number of genes: 1864
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006529
Total Bases: 20417 bp
Number of genes: 27
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006530
Total Bases: 44013 bp
Number of genes: 51
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007930
Total Bases: 242436 bp
Number of genes: 242
Released: Mar 30, 2006.
Modified: May 3, 2006.
Primary publication: Multireplicon genome architecture of Lactobacillus salivarius.

Lactococcus lactis subsp. cremoris SK11

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008527
Total Bases: 2438589 bp
Number of genes: 2610
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008503
Total Bases: 14041 bp
Number of genes: 11
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008504
Total Bases: 9554 bp
Number of genes: 8
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008505
Total Bases: 74750 bp
Number of genes: 65
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008506
Total Bases: 47208 bp
Number of genes: 39
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008507
Total Bases: 14206 bp
Number of genes: 8
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Lactococcus lactis subsp. lactis Il1403

Sequenced by: INRA
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002662
Total Bases: 2365589 bp
Number of genes: 2425
Released: May 5, 2001.
Modified: Jan 18, 2006.
Primary publication: Low-redundancy sequencing of the entire Lactococcus lactis IL1403 genome.

Lawsonia intracellularis PHE/MN1-00

Sequenced by: University Minnesota
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008011
Total Bases: 1457619 bp
Number of genes: 1187
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008012
Total Bases: 27048 bp
Number of genes: 29
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008013
Total Bases: 39794 bp
Number of genes: 24
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008014
Total Bases: 194553 bp
Number of genes: 104
Released: May 5, 2006.
Modified: May 9, 2006.
Primary publication:

Legionella pneumophila str. Lens

Sequenced by: Institut Pasteur
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006369
Total Bases: 3345687 bp
Number of genes: 3001
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006366
Total Bases: 59832 bp
Number of genes: 57
Released: Oct 7, 2004.
Modified: Dec 3, 2005.
Primary publication: Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.

Legionella pneumophila str. Paris

Sequenced by: Institut Pasteur
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006368
Total Bases: 3503610 bp
Number of genes: 3136
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006365
Total Bases: 131885 bp
Number of genes: 142
Released: Oct 7, 2004.
Modified: Dec 3, 2005.
Primary publication: Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity.

Legionella pneumophila subsp. pneumophila str. Philadelphia 1

Sequenced by: Columbia Genome Center
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002942
Total Bases: 3397754 bp
Number of genes: 3002
Released: Sep 28, 2004.
Modified: Sep 20, 2006.
Primary publication-1: The genomic sequence of the accidental pathogen Legionella pneumophila.
Primary publication-2: Legionella effectors that promote nonlytic release from protozoa.
Primary publication-3: Multiple substrates of the Legionella pneumophila Dot/Icm system identified by interbacterial protein transfer.
Primary publication-4: Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping.

Leifsonia xyli subsp. xyli str. CTCB07

Sequenced by: Sao Paulo state (Brazil) Consortium
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006087
Total Bases: 2584158 bp
Number of genes: 2376
Released: Aug 13, 2004.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli.

Leptospira borgpetersenii serovar Hardjo-bovis JB197

Sequenced by: Monash University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008510
Total Bases: 3576473 bp
Number of genes: 2980
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008511
Total Bases: 299762 bp
Number of genes: 262
Released: Oct 13, 2006.
Modified: Oct 22, 2006.
Primary publication: Genome reduction in Leptospira borgpetersenii reflects limited transmission potential.

Leptospira borgpetersenii serovar Hardjo-bovis L550

Sequenced by: Monash University
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008508
Total Bases: 3614446bp
Number of genes: 3003
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008509
Total Bases: 317336 bp
Number of genes: 270
Released: Oct 13, 2006.
Modified: Oct 22, 2006.
Primary publication: Genome reduction in Leptospira borgpetersenii reflects limited transmission potential.

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

Sequenced by: Sao Paulo state (Brazil) Consortium
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005823
Total Bases: 4277185bp
Number of genes: 3481
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005824
Total Bases: 350181 bp
Number of genes: 272
Released: Mar 19, 2004.
Modified: Apr 3, 2006.
Primary publication: Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.

Leptospira interrogans serovar Lai str. 56601

Sequenced by: Chinese National HGC, Shanghai
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004342
Total Bases: 4332241 bp
Number of genes: 4401
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004343
Total Bases: 358943 bp
Number of genes: 367
Released: Apr 25, 2003.
Modified: Jul 19, 2006.
Primary publication: Unique physiological and pathogenic features of Leptospira interrogans revealed by whole-genome sequencing.

Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008531
Total Bases: 2038396 bp
Number of genes: 2073
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008496
Total Bases: 37367 bp
Number of genes: 35
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Listeria innocua Clip11262

Sequenced by: Institut Pasteur
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003212
Total Bases: 3011208 bp
Number of genes: 3065
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003383
Total Bases: 81905 bp
Number of genes: 80
Released: Oct 27, 2001.
Modified: Dec 3, 2005.
Primary publication: Comparative genomics of Listeria species.
Publication-1: New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays.
Publication-2: Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA.

Listeria monocytogenes EGD-e

Sequenced by: European Consortium
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003210
Total Bases: 2944528 bp
Number of genes: 2940
Released: Oct 27, 2001.
Modified: Dec 2, 2005.
Primary publication: Comparative genomics of Listeria species.
Publication-1: New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays.
Publication-2: Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA.

Sequenced by: TIGR
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002973
Total Bases: 2905187 bp
Number of genes: 2934
Released: Apr 30, 2004.
Modified: Aug 31, 2006.
Primary publication: Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.
Publication: New aspects regarding evolution and virulence of Listeria monocytogenes revealed by comparative genomics and DNA arrays.

Listeria welshimeri serovar 6b str. SLCC5334

Sequenced by: Universitat Giessen
Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008555
Total Bases: 2814130 bp
Number of genes: 2864
Released: Oct 27, 2006.
Modified: Oct 31, 2006.
Primary publication: Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.

Magnetospirillum magneticum AMB-1

Sequenced by: Tokyo University of Agriculture and Technology, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007626
Total Bases: 4967148 bp
Number of genes: 4563
Released: Dec 1, 2005.
Modified: Apr 3, 2006.
Primary publication: Complete Genome Sequence of the Facultative Anaerobic Magnetotactic Bacterium Magnetospirillum sp. strain AMB-1.

Mannheimia succiniciproducens MBEL55E

Sequenced by: Korea Advanced Institute of Science and Technology, Republic of Korea, Yuseong-gu

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006300
Total Bases: 2314078 bp
Number of genes: 2459
Released: Sep 21, 2004.
Modified: Dec 2, 2005.
Primary publication: The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens.

Maricaulis maris MCS10

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008347
Total Bases: 3368780 bp
Number of genes: 3133
Released: Sep 14, 2006.
Modified: Sep 16, 2006.
Primary publication:

Mesoplasma florum L1

Sequenced by: Broad Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006055
Total Bases: 793224 bp
Number of genes: 717
Released: Jul 19, 2004.
Modified: Dec 3, 2005.
Primary publication:

Mesorhizobium loti MAFF303099

Sequenced by: Kazusa

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002678
Total Bases: 7036071 bp
Number of genes: 6804
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002679
Total Bases: 351911 bp
Number of genes: 320
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002682
Total Bases: 208315 bp
Number of genes: 209
Released: Feb 24, 2001.
Modified: Dec 3, 2005.
Primary publication: Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.

Mesorhizobium sp. BNC1

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008254
Total Bases: 4412446 bp
Number of genes: 4170
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008242
Total Bases: 343931 bp
Number of genes: 343
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008243
Total Bases: 131247 bp
Number of genes: 122
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008244
Total Bases: 47561 bp
Number of genes: 49
Released: Jul 11, 2006.
Modified: Jul 25, 2006.
Primary publication:

Methanocaldococcus jannaschii DSM 2661

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000909
Total Bases: 1664970 bp
Number of genes: 1772
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001732
Total Bases: 58407 bp
Number of genes: 46
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001733
Total Bases: 16550 bp
Number of genes: 12
Released: Aug 23, 1996.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.

Methanococcoides burtonii DSM 6242

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007955
Total Bases: 2575032 bp
Number of genes: 2497
Released: Apr 10, 2006.
Modified: Apr 13, 2006.
Primary publication:

Methanococcus maripaludis S2

Sequenced by: University of Washington

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005791
Total Bases: 1661137 bp
Number of genes: 1772
Released: Oct 7, 2004.
Modified: Jan 18, 2006.
Primary publication: Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.

Methanopyrus kandleri AV19

Sequenced by: Fidelity Systems

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003551
Total Bases: 1694969 bp
Number of genes: 1729
Released: Apr 4, 2002.
Modified: Dec 2, 2005.
Primary publication: The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.

Methanosaeta thermophila PT

Sequenced by: US DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008553
Total Bases: 1879471bp
Number of genes: 1781
Released: Oct 25, 2006.
Modified: Oct 28, 2006.
Primary publication:

Methanosarcina acetivorans C2A

Sequenced by: Broad Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003552
Total Bases: 5751492 bp
Number of genes: 4721
Released: Apr 5, 2002.
Modified: Jan 17, 2006.
Primary publication: The genome of M. acetivorans reveals extensive metabolic and physiological diversity.

Methanosarcina barkeri str. fusaro

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007355
Total Bases: 4837408 bp
Number of genes: 3811
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007355
Total Bases: 4837408 bp
Number of genes: 3811
Released: Aug 12, 2005.
Modified: Jan 23, 2006.
Primary publication:

Methanosarcina mazei Go1

Sequenced by: Goettingen Genomics Laboratory

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003901
Total Bases: 4096345 bp
Number of genes: 3437
Released: Jul 20, 2002.
Modified: Jan 23, 2006.
Primary publication: The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea.

Methanosphaera stadtmanae DSM 3091

Sequenced by: University of Goettingen

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007681
Total Bases: 1767403 bp
Number of genes: 1588
Released: Jan 5, 2006.
Modified: Mar 30, 2006.
Primary publication: The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis.

Methanospirillum hungatei JF-1

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007796
Total Bases: 3544738 bp
Number of genes: 3304
Released: Feb 17, 2006.
Modified: Mar 30, 2006.
Primary publication:

Methanothermobacter thermautotrophicus str. Delta H

Sequenced by: Genome Therapeutics Corporation

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000916
Total Bases: 1751377 bp
Number of genes: 1920
Released: Nov 26, 1997.
Modified: Dec 2, 2005.
Primary publication: Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Methylobacillus flagellatus KT

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007947
Total Bases: 2971517 bp
Number of genes: 2822
Released: Apr 10, 2006.
Modified: Apr 13, 2006.
Primary publication:

Methylococcus capsulatus str. Bath

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002977
Total Bases: 3304561 bp
Number of genes: 3056
Released: Sep 24, 2004.
Modified: Apr 3, 2006.
Primary publication: Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).

Moorella thermoacetica ATCC 39073

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007644
Total Bases: 2628784 bp
Number of genes: 2615
Released: Dec 12, 2005.
Modified: Apr 4, 2006.
Primary publication:

Mycobacterium avium subsp. paratuberculosis K-10

Sequenced by: Univ. Minnesota

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002944
Total Bases: 4829781 bp
Number of genes: 4398
Released: Jan 30, 2004.
Modified: Jan 18, 2006.
Primary publication: The complete genome sequence of Mycobacterium avium subspecies paratuberculosis.

Mycobacterium bovis AF2122/97

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002945
Total Bases: 4345492 bp
Number of genes: 4003
Released: Jun 6, 2003.
Modified: Jun 7, 2006.
Primary publication: The complete genome sequence of Mycobacterium bovis.

Mycobacterium leprae TN

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002677
Total Bases: 3268203 bp
Number of genes: 2770
Released: Mar 10, 2001.
Modified: Dec 3, 2005.
Primary publication: Massive gene decay in the leprosy bacillus.

Mycobacterium sp. MCS

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008146
Total Bases: 5705448 bp
Number of genes: 5473
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008147
Total Bases: 215075 bp
Number of genes: 225
Released: Jun 9, 2006.
Modified: Jun 13, 2006.
Primary publication: Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil.

Mycobacterium tuberculosis CDC1551

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002755
Total Bases: 4403837 bp
Number of genes: 4293
Released: Sep 10, 2002.
Modified: Jan 17, 2006.
Primary publication: Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.

Mycobacterium tuberculosis H37Rv

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000962
Total Bases: 4411532 bp
Number of genes: 4048
Released: Jun 20, 1998.
Modified: Jan 17, 2006.
Primary publication-1: Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
Primary publication-2: Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv.

Mycoplasma capricolum subsp. capricolum ATCC 27343

Sequenced by: J. Craig Venter Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007633
Total Bases: 1010023 bp
Number of genes: 867
Released: Dec 6, 2005.
Modified: Mar 30, 2006.
Primary publication:

Mycoplasma gallisepticum R

Sequenced by: Univ. Connecticut

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004829
Total Bases: 996422 bp
Number of genes: 781
Released: Sep 2, 2003.
Modified: Dec 2, 2005.
Primary publication: The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain R(low).

Mycoplasma genitalium G37

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000908
Total Bases: 580076 bp
Number of genes: 525
Released: Oct 20, 1995.
Modified: Jul 3, 2006.
Primary publication-1: The minimal gene complement of Mycoplasma genitalium.
Primary publication-2: A survey of the Mycoplasma genitalium genome by using random sequencing.
Primary publication-3: Characterization of repetitive DNA in the Mycoplasma genitalium genome: possible role in the generation of antigenic variation.

Mycoplasma hyopneumoniae 232

Sequenced by: Iowa State University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006360
Total Bases: bp
Number of genes:
Released: Oct 19, 2004.
Modified: Jan 9, 2006.
Primary publication: he genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis.

Mycoplasma hyopneumoniae 7448

Sequenced by: LNCC - Laboratorio Nacional de

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007332
Total Bases: 920079 bp
Number of genes: 711
Released: Aug 8, 2005.
Modified: Dec 3, 2005.
Primary publication: Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.

Mycoplasma hyopneumoniae J

Sequenced by: LNCC - Laboratorio Nacional de Computacao Cientifica

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007295
Total Bases: 897405 bp
Number of genes: 709
Released: Aug 5, 2005.
Modified: Dec 3, 2005.
Primary publication: Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.

Mycoplasma mobile 163K

Sequenced by: Broad Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006908
Total Bases: 777079 bp
Number of genes: 667
Released: Aug 4, 2004.
Modified: Aug 3, 2006.
Primary publication: The complete genome and proteome of Mycoplasma mobile.

Mycoplasma mycoides subsp. mycoides SC str. PG1

Sequenced by: Royal Institute of Technology, Stockholm, Sweden

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005364
Total Bases: 1211703 bp
Number of genes: 1052
Released: Feb 6, 2004.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP).

Mycoplasma penetrans HF-2

Sequenced by: NIID Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004432
Total Bases: 1358633 bp
Number of genes: 1069
Released: Dec 6, 2002.
Modified: Jun 7, 2006.
Primary publication: The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humans.

Mycoplasma pneumoniae M129

Sequenced by: Heidelberg University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000912
Total Bases: 816394 bp
Number of genes: 733
Released: Nov 15, 1996.
Modified: Jan 18, 2006.
Primary publication-1: Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae.
Primary publication-2: Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

Mycoplasma pulmonis UAB CTIP

Sequenced by: Genoscope

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002771
Total Bases: 963879 bp
Number of genes: 814
Released: May 23, 2001.
Modified: Jun 7, 2006.
Primary publication: The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis.

Mycoplasma synoviae 53

Sequenced by: LNCC - Laboratorio Nacional de Computacao Cientifica

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007294
Total Bases: 799476 bp
Number of genes: 728
Released: Aug 5, 2005.
Modified: Mar 30, 2006.
Primary publication: Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.

Myxococcus xanthus DK 1622

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008095
Total Bases: 9139763 bp
Number of genes: 7456
Released: Jun 7, 2006.
Modified: Jun 9, 2006.
Primary publication:

Nanoarchaeum equitans Kin4-M

Sequenced by: DIVERSA

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005213
Total Bases: 490885 bp
Number of genes: 582
Released: Oct 21, 2003.
Modified: Dec 2, 2005.
Primary publication: The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism.

Natronomonas pharaonis DSM 2160

Sequenced by: Max Planck Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007426
Total Bases: 2595221 bp
Number of genes: 2726
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007427
Total Bases: 130989 bp
Number of genes: 132
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007428
Total Bases: 23486 bp
Number of genes: 36
Released: Sep 28, 2005.
Modified: Jan 18, 2006.
Primary publication: Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis.

Neisseria gonorrhoeae FA 1090

Sequenced by: Univ. Oklahoma

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002946
Total Bases: 2153922 bp
Number of genes: 2069
Released: Feb 14, 2005.
Modified: Jan 18, 2006.
Primary publication:

Neisseria meningitidis MC58

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003112
Total Bases: 2272360 bp
Number of genes: 2225
Released: Mar 10, 2000.
Modified: Jan 17, 2006.
Primary publication: Inventory of the proteins in Neisseria meningitidis serogroup B strain MC58.

Neisseria meningitidis Z2491

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003116
Total Bases: 2184406 bp
Number of genes: 2193
Released: Apr 13, 2000.
Modified: Jan 17, 2006.
Primary publication: Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491.

Neorickettsia sennetsu str. Miyayama

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007798
Total Bases: 859006 bp
Number of genes: 973
Released: Feb 21, 2006.
Modified: Mar 30, 2006.
Primary publication: Comparative genomics of emerging human ehrlichiosis agents.

Nitrobacter hamburgensis X14

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007964
Total Bases: 4406967 bp
Number of genes: 4107
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007959
Total Bases: 294829 bp
Number of genes: 314
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007960
Total Bases: 188318 bp
Number of genes: 185
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007961
Total Bases: 121408 bp
Number of genes: 135
Released: Apr 11, 2006.
Modified: Apr 17, 2006.
Primary publication:

Nitrobacter winogradskyi Nb-255

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007406
Total Bases: 3402093 bp
Number of genes: 3198
Released: Sep 12, 2005.
Modified: Oct 19, 2006.
Primary publication: Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255.

Nitrosococcus oceani ATCC 19707

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007484
Total Bases: 3481691 bp
Number of genes: 3143
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007483
Total Bases: 40420 bp
Number of genes: 43
Released: Oct 4, 2005.
Modified: Mar 31, 2006.
Primary publication:

Nitrosomonas europaea ATCC 19718

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004757
Total Bases: 2812094 bp
Number of genes: 2620
Released: Apr 18, 2003.
Modified: Apr 3, 2006.
Primary publication: Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.

Nitrosomonas eutropha C71

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008344
Total Bases: 2661057 bp
Number of genes: 2577
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008341
Total Bases: 65132 bp
Number of genes: 56
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008342
Total Bases: 55635 bp
Number of genes: 53
Released: Sep 13, 2006.
Modified: Sep 15, 2006.
Primary publication:

Nitrosospira multiformis ATCC 25196

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007614
Total Bases: 3184243 bp
Number of genes: 2828
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007615
Total Bases: 18871 bp
Number of genes: 17
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007616
Total Bases: 17036 bp
Number of genes: 16
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007617
Total Bases: 14159 bp
Number of genes: 15
Released: Nov 15, 2005.
Modified: Mar 31, 2006.
Primary publication:

Nocardia farcinica IFM 10152

Sequenced by: Department of Bioactive Molecules, National Institute of Infectious Diseases

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006361
Total Bases: 6021225 bp
Number of genes: 5747
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006362
Total Bases: 184026 bp
Number of genes: 160
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006363
Total Bases: 87093 bp
Number of genes: 93
Released: Oct 7, 2004.
Modified: Dec 3, 2005.
Primary publication: The complete genomic sequence of Nocardia farcinica IFM 10152.

Nostoc sp. PCC 7120

Sequenced by: Kazusa

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003272
Total Bases: 6413771 bp
Number of genes: 5431
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003276
Total Bases: 408101 bp
Number of genes: 386
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003240
Total Bases: 186614 bp
Number of genes: 186
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003267
Total Bases: 101965 bp
Number of genes: 90
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003273
Total Bases: 55414 bp
Number of genes: 85
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003270
Total Bases: 40340 bp
Number of genes: 31
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003241
Total Bases: 5584 bp
Number of genes: 5
Released: Jan 5, 2002.
Modified: Jan 9, 2006.
Primary publication: Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120.

Novosphingobium aromaticivorans DSM 12444

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007794
Total Bases: 3561584 bp
Number of genes: 3412
Released: Feb 10, 2006.
Modified: Mar 30, 2006.
Primary publication:

Oceanobacillus iheyensis HTE831

Sequenced by: JAMSTEC

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004193
Total Bases: 3630528 bp
Number of genes: 3594
Released: Dec 26, 2001.
Modified: Dec 2, 2005.
Primary publication-1: Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halotolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge.
Primary publication-2: Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments.

Oenococcus oeni PSU-1

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008528
Total Bases: 1780517 bp
Number of genes: 1864
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Onion yellows phytoplasma OY-M

Sequenced by: The University of Tokyo, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005303
Total Bases: 860631 bp
Number of genes: 793
Released: Dec 9, 2003.
Modified: Dec 3, 2005.
Primary publication: Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma.

Pasteurella multocida subsp. multocida str. Pm70

Sequenced by: Univ. Minnesota

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002663
Total Bases: 2257487 bp
Number of genes: 2092
Released: Mar 15, 2001.
Modified: Dec 3, 2005.
Primary publication: Complete genomic sequence of Pasteurella multocida, Pm70.

Pediococcus pentosaceus ATCC 25745

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008525
Total Bases: 1832387 bp
Number of genes: 1847
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Pelobacter carbinolicus DSM 2380

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007498
Total Bases: 3665893 bp
Number of genes: 3451
Released: Oct 12, 2005.
Modified: Nov 1, 2006.
Primary publication:

Pelodictyon luteolum DSM 273

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007512
Total Bases: 2364842 bp
Number of genes: 2137
Released: Oct 26, 2005.
Modified: Mar 31, 2006.
Primary publication:

Photobacterium profundum SS9

Sequenced by: University of Padova, Italy

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006370
Total Bases: 4085304 bp
Number of genes: 3603
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006371
Total Bases: 2237943 bp
Number of genes: 2030
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005871
Total Bases: 80033 bp
Number of genes: 67
Released: Apr 30, 2004.
Modified: Jan 18, 2006.
Primary publication: Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment.

Photorhabdus luminescens subsp. laumondii TTO1

Sequenced by: Institut Pasteur

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005126
Total Bases: 5688987 bp
Number of genes: 5012
Released: Oct 7, 2003.
Modified: Dec 3, 2005.
Primary publication: The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.

Picrophilus torridus DSM 9790

Sequenced by: Institut of Microbiology and Genetics, University of Goettingen

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005877
Total Bases: 1545895 bp
Number of genes: 1581
Released: Jun 9, 2004.
Modified: Dec 3, 2005.
Primary publication: Genome sequence of Picrophilus torridus and its implications for life around pH 0.

Polaromonas sp. JS666

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007948
Total Bases: 5200264 bp
Number of genes: 4962
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007949
Total Bases: 360405 bp
Number of genes: 341
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007950
Total Bases: 338007 bp
Number of genes: 323
Released: Apr 10, 2006.
Modified: Apr 13, 2006.
Primary publication: Biodegradation of cis-dichloroethene as the sole carbon source by a beta-proteobacterium.

Porphyromonas gingivalis W83

Sequenced by: Porphyromonas gingivalis Genome Project

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002950
Total Bases: 2343476 bp
Number of genes: 2015
Released: Sep 2, 2003.
Modified: Jan 18, 2006.
Primary publication: Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.

Prochlorococcus marinus str. MIT 9312

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007577
Total Bases: 1709204 bp
Number of genes: 1856
Released: Nov 2, 2005.
Modified: Jun 16, 2006.
Primary publication:

Prochlorococcus marinus str. MIT 9313

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005071
Total Bases: 2410873 bp
Number of genes: 2330
Released: Aug 15, 2003.
Modified: Jun 16, 2006.
Primary publication: Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.

Prochlorococcus marinus str. NATL2A

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007335
Total Bases: 1842899 bp
Number of genes: 1940
Released: Aug 9, 2005.
Modified: Jun 16, 2006.
Primary publication:

Prochlorococcus marinus subsp. marinus str. CCMP1375

Sequenced by: CNRS

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005042
Total Bases: 1751080 bp
Number of genes: 1930
Released: Aug 15, 2003.
Modified: Jul 24, 2006.
Primary publication: Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.

Prochlorococcus marinus subsp. pastoris str. CCMP1986

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005072
Total Bases: 1657990 bp
Number of genes: 1763
Released: Aug 15, 2003.
Modified: Jun 15, 2006.
Primary publication: Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.

Propionibacterium acnes KPA171202

Sequenced by: Gottingen Genom. Lab.

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006085
Total Bases: 2560265 bp
Number of genes: 2368
Released: Aug 3, 2004.
Modified: Apr 3, 2006.
Primary publication: The complete genome sequence of Propionibacterium acnes, a commensal of human skin.

Pseudoalteromonas atlantica T6c

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008228
Total Bases: 5187005 bp
Number of genes: 4397
Released: Jun 28, 2006.
Modified: Jun 30, 2006.
Primary publication:

Pseudoalteromonas haloplanktis TAC125

Sequenced by: CNRS

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007481
Total Bases: 3214944 bp
Number of genes: 3075
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007482
Total Bases: 635328 bp
Number of genes: 546
Released: Oct 3, 2005.
Modified: Jan 20, 2006.
Primary publication-1: Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations.
Primary publication-2: Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.

Pseudomonas aeruginosa PAO1

Sequenced by: PathoGenesis Corporation

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002516
Total Bases: 6264404 bp
Number of genes: 5651
Released: Sep 13, 2000.
Modified: Aug 3, 2000.
Primary publication: Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen.

Pseudomonas aeruginosa UCBPP-PA14

Sequenced by: Massachusetts General Hospital

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008463
Total Bases: bp
Number of genes:
Released: Oct 6, 2006.
Modified: Oct 13, 2006.
Primary publication: Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial.

Pseudomonas entomophila L48

Sequenced by: Genoscope

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008027
Total Bases: 5888780 bp
Number of genes: 5275
Released: May 10, 2006.
Modified: May 31, 2006.
Primary publication: Drosophila host defense after oral infection by an entomopathogenic Pseudomonas species.

Pseudomonas fluorescens Pf-5

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004129
Total Bases: 7074893 bp
Number of genes: 6231
Released: Jun 30, 2005.
Modified: Apr 3, 2006.
Primary publication: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Pseudomonas fluorescens PfO-1

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007492
Total Bases: 6438405 bp
Number of genes: 5833
Released: Oct 7, 2005.
Modified: Apr 4, 2006.
Primary publication:

Sequenced by:

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: bp
Number of genes:
Released: , .
Modified: , .
Primary publication:

Pseudomonas putida KT2440

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002947
Total Bases: 6181863 bp
Number of genes: 5516
Released: Jan 22, 2003.
Modified: Aug 17, 2006.
Primary publication: Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

Pseudomonas syringae pv. phaseolicola 1448A

Sequenced by: Cornell University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005773
Total Bases: 5928787 bp
Number of genes: 5225
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007274
Total Bases: 131950 bp
Number of genes: 149
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007275
Total Bases: 51711 bp
Number of genes: 60
Released: Aug 1, 2005.
Modified: Aug 9, 2006.
Primary publication: Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.

Pseudomonas syringae pv. syringae B728a

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007005
Total Bases: 6093698bp
Number of genes: 5220
Released: May 12, 2005.
Modified: Aug 17, 2006.
Primary publication: Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000.

Pseudomonas syringae pv. tomato str. DC3000

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004578
Total Bases: 6397126 bp
Number of genes: 5697
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004632
Total Bases: 67473 bp
Number of genes: 77
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004633
Total Bases: 73661 bp
Number of genes: 73
Released: Aug 21, 2003.
Modified: Oct 6, 2006.
Primary publication: The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.

Psychrobacter arcticus 273-4

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007204
Total Bases: 2650701 bp
Number of genes: 2211
Released: Jul 20, 2005.
Modified: Jan 18, 2006.
Primary publication:

Psychrobacter cryohalolentis K5

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007969
Total Bases: 3059876 bp
Number of genes: 2537
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007968
Total Bases: 41221 bp
Number of genes: 44
Released: Apr 18, 2006.
Modified: Apr 20, 2006.
Primary publication: Reproduction and metabolism at - 10 degrees C of bacteria isolated from Siberian permafrost.

Pyrobaculum aerophilum str. IM2

Sequenced by: UCLA/CalTech

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003364
Total Bases: 2222430 bp
Number of genes: 2706
Released: Jan 17, 2002.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.

Pyrococcus abyssi GE5

Sequenced by: Genoscope

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000868
Total Bases: 1765118 bp
Number of genes: 1993
Purine/Keto/Coding Asymmetry Plot
Accession: NC_001773
Total Bases: 3444 bp
Number of genes: 2
Released: Jun 1, 2001.
Modified: Dec 13, 2005.
Primary publication-1: An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.
Primary publication-2: Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Primary publication-3: Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea.

Pyrococcus furiosus DSM 3638

Sequenced by: Utah Genome Center

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003413
Total Bases: 1908256 bp
Number of genes: 2228
Released: Aug 3, 1999.
Modified: Dec 2, 2005.
Primary publication-1: Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences.
Primary publication-2: Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology.

Pyrococcus horikoshii OT3

Sequenced by: NITE

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000961
Total Bases: 1738505 bp
Number of genes: 2005
Released: Jul 29, 1998.
Modified: Aug 3, 2006.
Primary publication-1: Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.
Primary publication-2: Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 (supplement).

Ralstonia eutropha H16

Sequenced by: Gottingen Genom. Lab.

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008313
Total Bases: 4052032 bp
Number of genes: 3711
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008314
Total Bases: 2912490 bp
Number of genes: 2568
Released: Aug 30, 2006.
Modified: Oct 26, 2006.
Primary publication:

Ralstonia eutropha JMP134

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007347
Total Bases: 3806533 bp
Number of genes: 3529
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007348
Total Bases: 2726152bp
Number of genes: 2442
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007336
Total Bases: 634917 bp
Number of genes: 555
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007337
Total Bases: 87688 bp
Number of genes: 90
Released: Aug 10, 2005.
Modified: Mar 30, 2006.
Primary publication:

Ralstonia metallidurans CH34

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007973
Total Bases: 3928089bp
Number of genes: 3680
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007974
Total Bases: 2580084bp
Number of genes: 2341
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007971
Total Bases: 233720 bp
Number of genes: 241
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007972
Total Bases: 171459 bp
Number of genes: 164
Released: Apr 26, 2006.
Modified: Apr 27, 2006.
Primary publication:

Ralstonia solanacearum GMI1000

Sequenced by: Genoscope

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003295
Total Bases: 3716413 bp
Number of genes: 3509
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003296
Total Bases: 2094509 bp
Number of genes: 1685
Released: Feb 2, 2002.
Modified: Jan 18, 2006.
Primary publication: Genome sequence of the plant pathogen Ralstonia solanacearum.

Sequenced by: Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007761
Total Bases: 4381608 bp
Number of genes: 4126
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007762
Total Bases: 194229 bp
Number of genes: 182
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007763
Total Bases: 184338 bp
Number of genes: 165
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007764
Total Bases: 250948 bp
Number of genes: 234
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004041
Total Bases: 371254 bp
Number of genes: 354
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007765
Total Bases: 505334 bp
Number of genes: 459
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007766
Total Bases: 642517 bp
Number of genes: 573
Released: Feb 1, 2006.
Modified: Mar 10, 2006.
Primary publication: The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons.

Rhizobium leguminosarum bv. viciae 3841

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008378
Total Bases: 870021 bp
Number of genes: 789
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008380
Total Bases: 5057142 bp
Number of genes: 4800
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008379
Total Bases: 352782 bp
Number of genes: 313
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008381
Total Bases: 488135 bp
Number of genes: 471
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008382
Total Bases: 151564 bp
Number of genes: 188
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008383
Total Bases: 147463 bp
Number of genes: 142
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008384
Total Bases: 684202 bp
Number of genes: 644
Released: Sep 20, 2006.
Modified: Oct 19, 2006.
Primary publication:

Rhodobacter sphaeroides 2.4.1

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007493
Total Bases: 3188609 bp
Number of genes: 3092
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007494
Total Bases: 943016 bp
Number of genes: 865
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007488
Total Bases: 114178 bp
Number of genes: 102
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007489
Total Bases: 105284 bp
Number of genes: 90
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007490
Total Bases: 100828 bp
Number of genes: 98
Released: Oct 7, 2005.
Modified: Apr 3, 2006.
Primary publication:

Rhodococcus sp. RHA1

Sequenced by: University of British Columbia

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008268
Total Bases: 7804765 bp
Number of genes: 7279
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008269
Total Bases: 1123075 bp
Number of genes: 1150
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008270
Total Bases: 442536 bp
Number of genes: 458
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008271
Total Bases: 332361 bp
Number of genes: 334
Released: Jul 28, 2006.
Modified: Aug 22, 2006.
Primary publication: Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1.

Rhodoferax ferrireducens T118

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007908
Total Bases: 4712337 bp
Number of genes: <4304/li>
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007901
Total Bases: 257447 bp
Number of genes: 251
Released: Mar 10, 2006.
Modified: May 18, 2006.
Primary publication: Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III).

Rhodopirellula baltica SH 1

Sequenced by: Max-Plank-Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005027
Total Bases: 7145576 bp
Number of genes: 7404
Released: Jul 2, 2003.
Modified: Jan 18, 2006.
Primary publication: Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008435
Total Bases: 5505494 bp
Number of genes: 4972
Released: Oct 4, 2006.
Modified: Oct 5, 2006.
Primary publication:

Rhodopseudomonas palustris BisB18

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007925
Total Bases: 5513844 bp
Number of genes: 5016
Released: Mar 21, 2006.
Modified: Mar 30, 2006.
Primary publication:

Rhodopseudomonas palustris BisB5

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007958
Total Bases: 4892717 bp
Number of genes: 4492
Released: Apr 10, 2006.
Modified: Apr 14, 2006.
Primary publication:

Rhodopseudomonas palustris CGA009

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005296
Total Bases: 5459213 bp
Number of genes: 4891
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005297
Total Bases: 8427 bp
Number of genes: 7
Released: Jan 6, 2004.
Modified: May 30, 2006.
Primary publication: Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris.

Rhodopseudomonas palustris HaA2

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007778
Total Bases: 5331656 bp
Number of genes: 4772
Released: Feb 6, 2006.
Modified: Mar 30, 2006.
Primary publication:

Rhodospirillum rubrum ATCC 11170

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007643
Total Bases: 4352825 bp
Number of genes: 3870
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007641
Total Bases: 53732 bp
Number of genes: 50
Released: Dec 12, 2005.
Modified: Apr 3, 2006.
Primary publication:

Rickettsia bellii RML369-C

Sequenced by: CNRS

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007940
Total Bases: 1522076 bp
Number of genes: 1469
Released: Apr 5, 2006.
Modified: May 30, 2006.
Primary publication: Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens.

Rickettsia conorii str. Malish 7

Sequenced by: CNRS

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003103
Total Bases: 1268755 bp
Number of genes: 1414
Released: Oct 13, 2000.
Modified: Apr 3, 2006.
Primary publication-1: Selfish DNA in protein-coding genes of Rickettsia.
Primary publication-2: Mechanisms of evolution in Rickettsia conorii and R. prowazekii.

Rickettsia felis URRWXCal2

Sequenced by: CNRS

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007109
Total Bases: 1485148 bp
Number of genes: 1439
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007110
Total Bases: 62829 bp
Number of genes: 68
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007111
Total Bases: 39263 bp
Number of genes: 44
Released: Jun 7, 2005.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite.

Rickettsia prowazekii str. Madrid E

Sequenced by: Uppsala University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000963
Total Bases: 1111523 bp
Number of genes: 886
Released: Nov 21, 1998.
Modified: Jan 18, 2006.
Primary publication: The genome sequence of Rickettsia prowazekii and the origin of mitochondria.

Rickettsia typhi str. Wilmington

Sequenced by: Human Genome Sequencing Center, Baylor College of Medicine

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006142
Total Bases: 1111496 bp
Number of genes: 919
Released: Aug 20, 2004.
Modified: Apr 3, 2006.
Primary publication: Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.

Roseobacter denitrificans OCh 114

Sequenced by: Arizona State University/TGen

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008209
Total Bases: 4133097 bp
Number of genes: 4007
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008386
Total Bases: 106469 bp
Number of genes: 106
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008387
Total Bases: 69269 bp
Number of genes: 56
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008388
Total Bases: 16575 bp
Number of genes: 16
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008389
Total Bases: 5824 bp
Number of genes: 6
Released: Jun 22, 2006.
Modified: Jul 25, 2006.
Primary publication-1: solation of Aerobic Anoxygenic Photosynthetic Bacteria from Black Smoker Plume Waters of the Juan de Fuca Ridge in the Pacific Ocean.
Primary publication-2: Photosynthetic rhizobia
Primary publication-3: Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean.
Primary publication-4: Isolation of tellurite- and selenite-resistant bacteria from hydrothermal vents of the Juan de Fuca Ridge in the Pacific Ocean.

Rubrobacter xylanophilus DSM 9941

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008148
Total Bases: 3225748 bp
Number of genes: 3281
Released: Jun 9, 2006.
Modified: Jun 12, 2006.
Primary publication:

Saccharophagus degradans 2-40

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007912
Total Bases: 5057531 bp
Number of genes: 4067
Released: Mar 17, 2006.
Modified: Apr 3, 2006.
Primary publication:

Salinibacter ruber DSM 13855

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007677
Total Bases: 3551823 bp
Number of genes:2865
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007678
Total Bases: 35505 bp
Number of genes: 33
Released: Dec 20, 2005.
Modified: Mar 30, 2006.
Primary publication: The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.

Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67

Sequenced by: Chang Gung Genomic Medical Center, Chang Gung Memorial Hospital

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006905
Total Bases: 4755700 bp
Number of genes: 4699
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006855
Total Bases: 49558 bp
Number of genes: 51
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006856
Total Bases: 138742 bp
Number of genes: 173
Released: Apr 1, 2005.
Modified: Jan 18, 2006.
Primary publication: The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen.

Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150

Sequenced by: Wash.U-GSC

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006511
Total Bases: 4585229 bp
Number of genes: 4403
Released: Nov 9, 2004.
Modified: Dec 3, 2005.
Primary publication: Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid.

Salmonella enterica subsp. enterica serovar Typhi Ty2

Sequenced by: Univ. Wisconsin

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004631
Total Bases: 4791961 bp
Number of genes: 4645
Released: Mar 20, 2003.
Modified: Apr 4, 2006.
Primary publication: Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18.

Salmonella enterica subsp. enterica serovar Typhi str. CT18

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003198
Total Bases: 4809037 bp
Number of genes: 4711
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003384
Total Bases: 218160 bp
Number of genes: 246
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003385
Total Bases: 106516 bp
Number of genes: 129
Released: Oct 26, 2001.
Modified: Apr 4, 2006.
Primary publication: Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18.

Salmonella typhimurium LT2

Sequenced by: Wash.U-GSC

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003197
Total Bases: 4857432 bp
Number of genes: 4622
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003277
Total Bases: 93939 bp
Number of genes: 112
Released: Oct 26, 2001.
Modified: Apr 7, 2006.
Primary publication: Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.

Shewanella denitrificans OS217

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007954
Total Bases: 4545906 bp
Number of genes: 3905
Released: Apr 10, 2006.
Modified: Apr 13, 2006.
Primary publication:

Shewanella frigidimarina NCIMB 400

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008345
Total Bases: 4845257 bp
Number of genes: 4199
Released: Sep 14, 2006.
Modified: Sep 15, 2006.
Primary publication:

Shewanella oneidensis MR-1

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004347
Total Bases: 4969803 bp
Number of genes: 4566
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004349
Total Bases: 161613 bp
Number of genes: 172
Released: Oct 9, 2002.
Modified: Jan 17, 2006.
Primary publication-1: Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
Primary publication-2: Reannotation of Shewanella oneidensis genome.

Shewanella sp. MR-4

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008321
Total Bases: 4706287 bp
Number of genes: 4084
Released: Sep 1, 2006.
Modified: Sep 5, 2006.
Primary publication:

Shewanella sp. MR-7

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008322
Total Bases: 4792610 bp
Number of genes: 4178
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008320
Total Bases: 6499 bp
Number of genes: 8
Released: Sep 1, 2006.
Modified: Sep 5, 2006.
Primary publication:

Shigella boydii Sb227

Sequenced by: Microbial Genome Center of ChMPH

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007613
Total Bases: 4519823 bp
Number of genes: 4466
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007608
Total Bases: 126697 bp
Number of genes: 149
Released: Nov 9, 2005.
Modified: Mar 30, 2006.
Primary publication: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.

Shigella dysenteriae Sd197

Sequenced by: Microbial Genome Center of ChMPH

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007606
Total Bases: 4369232 bp
Number of genes: 4664
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007607
Total Bases: 182726 bp
Number of genes: 224
Released: Nov 9, 2005.
Modified: Mar 2, 2006.
Primary publication: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.

Shigella flexneri 2a str. 2457T

Sequenced by: Univ. Wisconsin

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004741
Total Bases: 4599354 bp
Number of genes: 4577
Released: Apr 22, 2003.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T.

Shigella flexneri 2a str. 301

Sequenced by: Microbial Genome Center of ChMPH

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004337
Total Bases: 4607203 bp
Number of genes: 4566
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004851
Total Bases: 221618 bp
Number of genes: 267
Released: Oct 18, 2002.
Modified: Apr 3, 2006.
Primary publication: Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157.

Shigella flexneri 5 str. 8401

Sequenced by: Microbial Genome Center of ChMPH

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008258
Total Bases: 4574284 bp
Number of genes: 4434
Released: Jul 21, 2006.
Modified: Jul 28, 2006.
Primary publication: Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a.

Shigella sonnei Ss046

Sequenced by: Microbial Genome Center of ChMPH

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007384
Total Bases: 4825265 bp
Number of genes: 4553
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007385
Total Bases: 214396 bp
Number of genes: 241
Released: Aug 29, 2005.
Modified: Mar 30, 2006.
Primary publication: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery.

Silicibacter pomeroyi DSS-3

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003911
Total Bases: 4109442 bp
Number of genes: 3901
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006569
Total Bases: 491611 bp
Number of genes: 447
Released: Dec 17, 2004.
Modified: Jan 18, 2006.
Primary publication: Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.

Silicibacter sp. TM1040

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008044
Total Bases: 3200938 bp
Number of genes: 3082
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008042
Total Bases: 130973 bp
Number of genes: 116
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008043
Total Bases: 821788 bp
Number of genes: 758
Released: May 22, 2006.
Modified: May 24, 2006.
Primary publication:

Sinorhizobium meliloti 1021

Sequenced by: MELILO

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003047
Total Bases: 3654135 bp
Number of genes: 3412
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003037
Total Bases: 1354226 bp
Number of genes: 1296
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003078
Total Bases: 1683333 bp
Number of genes: 1571
Released: Jul 28, 2001.
Modified: Dec 3, 2005.
Primary publication-1: The composite genome of the legume symbiont Sinorhizobium meliloti.
Primary publication-2: Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.

Sodalis glossinidius str. 'morsitans'

Sequenced by: Kitasato Institute for Life Sciences, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007712
Total Bases: 4171146 bp
Number of genes: 2523
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007713
Total Bases: 83306 bp
Number of genes: 54
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007714
Total Bases: 27240 bp
Number of genes: 23
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007715
Total Bases: 10810 bp
Number of genes: 7
Released: Jan 10, 2006.
Modified: Mar 30, 2006.
Primary publication: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host.

Solibacter usitatus Ellin6076

Sequenced by: US DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008536
Total Bases: 9965640 bp
Number of genes: 8002
Released: Oct 16, 2006.
Modified: Nov 1, 2006.
Primary publication:

Sphingopyxis alaskensis RB2256

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008048
Total Bases: 3345170 bp
Number of genes: 3230
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008036
Total Bases: 28543 bp
Number of genes: 30
Released: May 18, 2006.
Modified: May 30, 2006.
Primary publication:

Staphylococcus aureus RF122

Sequenced by: Univ. Minnesota

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007622
Total Bases: 2742531 bp
Number of genes: 2665
Released: Nov 24, 2005.
Modified: Jan 18, 2006.
Primary publication:

Staphylococcus aureus subsp. aureus COL

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002951
Total Bases: 2809422 bp
Number of genes: 2724
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006629
Total Bases: 4440 bp
Number of genes: 3
Released: Jan 13, 2005.
Modified: Jan 17, 2006.
Primary publication: Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.

Staphylococcus aureus subsp. aureus MRSA252

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002952
Total Bases: 2902619 bp
Number of genes: 2845
Released: Jun 24, 2004.
Modified: Apr 3, 2006.
Primary publication: Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.

Staphylococcus aureus subsp. aureus MSSA476

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002953
Total Bases: 2799802 bp
Number of genes: 2723
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005951
Total Bases: 20652 bp
Number of genes: 24
Released: Jun 24, 2004.
Modified: Dec 3, 2005.
Primary publication: Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.

Staphylococcus aureus subsp. aureus MW2

Sequenced by: NITE

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003923
Total Bases: 2820462 bp
Number of genes: 2712
Released: Jun 5, 2002.
Modified: Dec 2, 2005.
Primary publication: Genome and virulence determinants of high virulence community-acquired MRSA.

Staphylococcus aureus subsp. aureus Mu50

Sequenced by: Juntendo University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002758
Total Bases: 2878529 bp
Number of genes: 2775
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002774
Total Bases: 25107 bp
Number of genes: 34
Released: Jun 22, 2001.
Modified: Jan 17, 2006.
Primary publication: Whole genome sequencing of meticillin-resistant Staphylococcus aureus.

Staphylococcus aureus subsp. aureus N315

Sequenced by: Juntendo University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002745
Total Bases: 2814816 bp
Number of genes: 2669
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003140
Total Bases: 24653 bp
Number of genes: 31
Released: Jun 22, 2001.
Modified: Jan 17, 2006.
Primary publication: Whole genome sequencing of meticillin-resistant Staphylococcus aureus.

Staphylococcus aureus subsp. aureus NCTC 8325

Sequenced by: University of Oklahoma

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007795
Total Bases: 2821361 bp
Number of genes: 2969
Released: Feb 13, 2006.
Modified: Mar 30, 2006.
Primary publication:

Staphylococcus aureus subsp. aureus USA300

Sequenced by: University of California, San Francisco

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007793
Total Bases: 2872769 bp
Number of genes: 2648
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007790
Total Bases: 3125 bp
Number of genes: 5
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007791
Total Bases: 4439 bp
Number of genes: 3
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007792
Total Bases: 37136 bp
Number of genes: 36
Released: Feb 10, 2006.
Modified: Mar 30, 2006.
Primary publication: Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus.

Staphylococcus epidermidis ATCC 12228

Sequenced by: Chinese National HGC, Shanghai

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004461
Total Bases: 2499279 bp
Number of genes: 2495
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005008
Total Bases: 4439 bp
Number of genes: 3
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005007
Total Bases: 4679 bp
Number of genes: 6
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005006
Total Bases: 8007 bp
Number of genes: 8
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005005
Total Bases: 17261 bp
Number of genes: 16
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005004
Total Bases: 24365 bp
Number of genes: 22
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005003
Total Bases: 6585 bp
Number of genes: 11
Released: Sep 3, 2003.
Modified: Dec 16, 2005.
Primary publication: Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).

Staphylococcus epidermidis RP62A

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002976
Total Bases: 2161530 bp
Number of genes: 2635
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006663
Total Bases: 7310 bp
Number of genes: 33
Released: Jan 18, 2005.
Modified: Jan 17, 2006.
Primary publication: Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.

Staphylococcus haemolyticus JCSC1435

Sequenced by: NITE

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007168
Total Bases: 2685015 bp
Number of genes: 2753
Released: Jun 30, 2005.
Modified: Jan 18, 2006.
Primary publication: Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species.

Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Sequenced by: Kitasato Institute for Life Sciences, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007350
Total Bases: 2516575 bp
Number of genes: 2527
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007351
Total Bases: 38454 bp
Number of genes: 45
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007352
Total Bases: 22870 bp
Number of genes: 23
Released: Aug 12, 2005.
Modified: Apr 26, 2006.
Primary publication: Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection.

Streptococcus agalactiae 2603V/R

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004116
Total Bases: 2160267 bp
Number of genes: 2271
Released: Aug 30, 2002.
Modified: Apr 3, 2006.
Primary publication: Complete genome sequence and comparative genomic analysis of an emerging human pathogen, serotype V Streptococcus agalactiae.

Streptococcus agalactiae A909

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007432
Total Bases: 2127839 bp
Number of genes: 2136
Released: Sep 29, 2005.
Modified: Mar 30, 2006.
Primary publication: Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".

Streptococcus agalactiae NEM316

Sequenced by: Institut Pasteur

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004368
Total Bases: 2211485 bp
Number of genes: 2235
Released: Oct 2, 2002.
Modified: Jan 9, 2006.
Primary publication: Genome sequence of Streptococcus agalactiae, a pathogen causing invasive neonatal disease.

Streptococcus mutans UA159

Sequenced by: Univ. Oklahoma

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004350
Total Bases: 2030921 bp
Number of genes: 2042
Released: Oct 25, 2002.
Modified: Apr 4, 2006.
Primary publication: Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen.

Streptococcus pneumoniae D39

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008533
Total Bases: 2046115 bp
Number of genes: 2069
Released: Oct 12, 2006.
Modified: Oct 27, 2006.
Primary publication: Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison With That of Unencapsulated Laboratory Strain R6.

Streptococcus pneumoniae R6

Sequenced by: Eli Lilly and Company

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003098
Total Bases: 2038615 bp
Number of genes: 2116
Released: Sep 7, 2001.
Modified: Jan 17, 2006.
Primary publication: Genome of the bacterium Streptococcus pneumoniae strain R6.

Streptococcus pneumoniae TIGR4

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003028
Total Bases: 2160837 bp
Number of genes: 2305
Released: Jul 21, 2001.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Streptococcus pyogenes M1 GAS

Sequenced by: Univ. Oklahoma

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002737
Total Bases: 1852441 bp
Number of genes: 1805
Released: Apr 11, 2001.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence of an M1 strain of Streptococcus pyogenes.

Streptococcus pyogenes MGAS10270

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008022
Total Bases: 1928252 bp
Number of genes: 2068
Released: May 4, 2006.
Modified: May 9, 2006.
Primary publication:

Streptococcus pyogenes MGAS10394

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006086
Total Bases: 1899877 bp
Number of genes: 1971
Released: Jul 24, 2004.
Modified: Apr 4, 2006.
Primary publication: Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain.

Streptococcus pyogenes MGAS10750

Sequenced by: Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008024
Total Bases: 1937111 bp
Number of genes: 2060
Released: May 4, 2006.
Modified: May 9, 2006.
Primary publication: Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.

Streptococcus pyogenes MGAS2096

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008023
Total Bases: 1860355 bp
Number of genes: 1979
Released: May 4, 2006.
Modified: May 9, 2006.
Primary publication: Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.

Streptococcus pyogenes MGAS315

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004070
Total Bases: 1900521 bp
Number of genes: 1951
Released: Jul 18, 2002.
Modified: Jan 17, 2006.
Primary publication: Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence.

Streptococcus pyogenes MGAS5005

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007297
Total Bases: 1838554 bp
Number of genes: 1950
Released: Aug 5, 2005.
Modified: Dec 3, 2005.
Primary publication: Evolutionary origin and emergence of a highly successful clone of serotype M1 group a Streptococcus involved multiple horizontal gene transfer events.

Streptococcus pyogenes MGAS6180

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007296
Total Bases: 1897573 bp
Number of genes: 1977
Released: Aug 4, 2005.
Modified: Dec 3, 2005.
Primary publication: Genome sequence of a serotype M28 strain of group a streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity.

Streptococcus pyogenes MGAS8232

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003485
Total Bases: 1895017 bp
Number of genes: 1857
Released: Mar 28, 2002.
Modified: Jul 3, 2006.
Primary publication: Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks.

Streptococcus pyogenes MGAS9429

Sequenced by: Lab of Human Bacterial Pathogenesis

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008021
Total Bases: 1836467bp
Number of genes: 1962
Released: May 4, 2006.
Modified: May 9, 2006.
Primary publication: Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus.

Streptococcus pyogenes SSI-1

Sequenced by: Osaka University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004606
Total Bases: 1894275 bp
Number of genes: 1928
Released: Jun 12, 2003.
Modified: Jan 17, 2006.
Primary publication: Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution.

Streptococcus thermophilus CNRZ1066

Sequenced by: Institut National de la Recherche Agronomique, France

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006449
Total Bases: 1796226bp
Number of genes: 2000
Released: Nov 16, 2004.
Modified: Jan 18, 2006.
Primary publication: Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus.

Streptococcus thermophilus LMD-9

Sequenced by: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008532
Total Bases: 1856368 bp
Number of genes: 2003
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008500
Total Bases: 4449 bp
Number of genes: 4
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008501
Total Bases: 3361 bp
Number of genes: 2
Released: Oct 13, 2006.
Modified: Oct 31, 2006.
Primary publication: Comparative genomics of the lactic acid bacteria.

Streptococcus thermophilus LMG 18311

Sequenced by: Univ. Catholique de Louvain, Belgium

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006448
Total Bases: 1796846 bp
Number of genes: 1974
Released: Nov 15, 2004.
Modified: Jan 18, 2006.
Primary publication: Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus.

Streptomyces avermitilis MA-4680

Sequenced by: NITE

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003155
Total Bases: 9025608 bp
Number of genes: 7666
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004719
Total Bases: 94287 bp
Number of genes: 96
Released: Sep 27, 2001.
Modified: Apr 13, 2006.
Primary publication-1: Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.
Primary publication-2: Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.

Streptomyces coelicolor A3(2)

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003888
Total Bases: 8667507 bp
Number of genes: 7912
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003903
Total Bases: 356023 bp
Number of genes: 355
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003904
Total Bases: 31317 bp
Number of genes: 34
Released: Jul 1, 1996.
Modified: Apr 3, 2006.
Primary publication-1: A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome.
Primary publication-2: Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).
Primary publication-3: Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism.

Sulfolobus acidocaldarius DSM 639

Sequenced by: Danish Archaea Centre

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007181
Total Bases: 2225959 bp
Number of genes: 2329
Released: Jul 5, 2005.
Modified: Mar 30, 2006.
Primary publication: The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota.

Sulfolobus solfataricus P2

Sequenced by: European/Canadian Consortium

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002754
Total Bases: 2992245 bp
Number of genes: 3031
Released: Jun 28, 2001.
Modified: Dec 3, 2005.
Primary publication: New insertion sequences of Sulfolobus: functional properties and implications for genome evolution in hyperthermophilic archaea.

Sulfolobus tokodaii str. 7

Sequenced by: NITE

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003106
Total Bases: 2694756 bp
Number of genes: 2874
Released: Sep 27, 2001.
Modified: Dec 3, 2005.
Primary publication-1: Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7.
Primary publication-2: New insertion sequences of Sulfolobus: functional properties and implications for genome evolution in hyperthermophilic archaea.

Symbiobacterium thermophilum IAM 14863

Sequenced by: Kitasato Institute for Life Sciences, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006177
Total Bases: 3566135 bp
Number of genes: 3481
Released: Sep 24, 2004.
Modified: Dec 3, 2005.
Primary publication: Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism.

Synechococcus elongatus PCC 6301

Sequenced by: Nagoya University, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006576
Total Bases: 2696255 bp
Number of genes: 2582
Released: Dec 21, 2004.
Modified: Jun 16, 2006.
Primary publication:

Synechococcus elongatus PCC 7942

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007604
Total Bases: 2695903 bp
Number of genes: 2665
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007595
Total Bases: 46366 bp
Number of genes: 50
Released: Mar 10, 2004.
Modified: Jun 15, 2006.
Primary publication:

Synechococcus sp. CC9311

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008319
Total Bases: 2606748 bp
Number of genes: 2944
Released: Sep 1, 2006.
Modified: Sep 5, 2006.
Primary publication: Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.

Synechococcus sp. CC9605

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007516
Total Bases: 2510659 bp
Number of genes: 2756
Released: Oct 27, 2005.
Modified: Jun 16, 2006.
Primary publication:

Synechococcus sp. CC9902

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007513
Total Bases: 2234828 bp
Number of genes: 2358
Released: Oct 26, 2005.
Modified: Jun 16, 2006.
Primary publication:

Synechococcus sp. JA-2-3B'a(2-13)

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007776
Total Bases: 3046682bp
Number of genes: 2942
Released: Feb 6, 2006.
Modified: Mar 30, 2006.
Primary publication: Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.

Synechococcus sp. JA-3-3Ab

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007775
Total Bases: 2932766 bp
Number of genes: 2897
Released: Feb 6, 2006.
Modified: Mar 30, 2006.
Primary publication: ffect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.

Synechococcus sp. WH 8102

Sequenced by: NCBI Genome Project

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005070
Total Bases: 2434428 bp
Number of genes: 2583
Released: Aug 15, 2003.
Modified: Jun 16, 2006.
Primary publication: The genome of a motile marine Synechococcus.

Synechocystis sp. PCC 6803

Sequenced by: Kazusa

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000911
Total Bases: 3221bp
Number of genes:
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005229
Total Bases: 119895 bp
Number of genes: 132
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005230
Total Bases: 103307 bp
Number of genes: 106
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005231
Total Bases: 44343 bp
Number of genes: 49
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005232
Total Bases: 106004 bp
Number of genes: 110
Released: Aug 31, 1995.
Modified: Jul 25, 2006.
Primary publication-1: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome.
Primary publication-2: Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

Syntrophobacter fumaroxidans MPOB

Sequenced by: US DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008554
Total Bases: 4990251 bp
Number of genes: 4162
Released: Oct 26, 2006.
Modified: Nov 1, 2006.
Primary publication:

Syntrophomonas wolfei subsp. wolfei str. Goettingen

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008346
Total Bases: 2936195 bp
Number of genes: 2642
Released: Sep 14, 2006.
Modified: Sep 15, 2006.
Primary publication:

Syntrophus aciditrophicus SB

Sequenced by: Integrated Genomics

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007759
Total Bases: 3179300 bp
Number of genes: 3219
Released: Jan 26, 2006.
Modified: Mar 30, 2006.
Primary publication:

Thermoanaerobacter tengcongensis MB4

Sequenced by: Beijing Center.HGP

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003869
Total Bases: 2689445 bp
Number of genes: 2721
Released: May 9, 2002.
Modified: Dec 3, 2005.
Primary publication-1: A complete sequence of the T. tengcongensis genome.
Primary publication-2: An analysis of the proteomic profile for Thermoanaerobacter tengcongensis under optimal culture conditions.

Sequenced by:

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: bp
Number of genes:
Released: , .
Modified: , .
Primary publication:

Thermobifida fusca YX

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007333
Total Bases: 3642249bp
Number of genes: 3184
Released: Aug 8, 2005.
Modified: Apr 3, 2006.
Primary publication:

Thermococcus kodakarensis KOD1

Sequenced by:

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: bp
Number of genes:
Released: , .
Modified: , .
Primary publication:

Sequenced by: Kyoto University, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006624
Total Bases: 2088737 bp
Number of genes: 2358
Released: Jan 13, 2005.
Modified: Jan 17, 2006.
Primary publication: Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.
Publication-2: Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp.
Publication-3: Crystal structure of DNA polymerase from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.
Publication-4: Catalyzing "hot" reactions: enzymes from hyperthermophilic Archaea.
Publication-5: Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1.
Publication-6: Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.

Thermoplasma acidophilum DSM 1728

Sequenced by: Max-Plank-Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002578
Total Bases: 1564906 bp
Number of genes: 1530
Released: Oct 12, 2000.
Modified: Dec 3, 2005.
Primary publication: The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum.

Thermoplasma volcanium GSS1

Sequenced by: National Institute of Advanced Industrial Science and Technology, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002689
Total Bases: 1584804 bp
Number of genes: 1548
Released: Dec 20, 2000.
Modified: Dec 3, 2005.
Primary publication: Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium.

Thermosynechococcus elongatus BP-1

Sequenced by: Kazusa

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004113
Total Bases: 2593857 bp
Number of genes: 2525
Released: Sep 21, 2002.
Modified: Jun 16, 2006.
Primary publication:

Sequenced by:

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00
Total Bases: bp
Number of genes:
Released: , .
Modified: , .
Primary publication:

Thermotoga maritima MSB8

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000853
Total Bases: 1860725 bp
Number of genes: 1928
Released: Jun 9, 1999.
Modified: Dec 3, 2005.
Primary publication: Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.

Thermus thermophilus HB27

Sequenced by: Goettingen Genomics Laboratory

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005835
Total Bases: 1894877 bp
Number of genes: 2035
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005838
Total Bases: 232605 bp
Number of genes: 228
Released: Apr 6, 2004.
Modified: Apr 4, 2006.
Primary publication: The genome sequence of the extreme thermophile Thermus thermophilus.

Thermus thermophilus HB8

Sequenced by: National Institute of Advanced Industrial Science and Technology, Japan

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006461
Total Bases: 1849742 bp
Number of genes: 2026
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006463
Total Bases: 9322 bp
Number of genes: 14
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006462
Total Bases: 256992 bp
Number of genes: 251
Released: Apr 5, 2004.
Modified: Dec 3, 2005.
Primary publication:

Thiobacillus denitrificans ATCC 25259

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007404
Total Bases: 2909809 bp
Number of genes: 2879
Released: Sep 1, 2005.
Modified: Feb 7, 2006.
Primary publication: The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.

Thiomicrospira crunogena XCL-2

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007520
Total Bases: 2427734bp
Number of genes: 2255
Released: Oct 31, 2005.
Modified: Mar 31, 2006.
Primary publication:

Thiomicrospira denitrificans ATCC 33889

Sequenced by: US DOE Joint Genome Institute (JGI-PGF)

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007575
Total Bases: 2201561 bp
Number of genes: 2163
Released: Nov 1, 2005.
Modified: Apr 4, 2006.
Primary publication:

Treponema denticola ATCC 35405

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002967
Total Bases: 2843201 bp
Number of genes: 2838
Released: Apr 6, 2004.
Modified: Apr 3, 2006.
Primary publication: Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.

Treponema pallidum subsp. pallidum str. Nichols

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_000919
Total Bases: 1138011 bp
Number of genes: 1095
Released: Jul 17, 1998.
Modified: Dec 3, 2005.
Primary publication: Complete genome sequence of Treponema pallidum, the syphilis spirochete.

Trichodesmium erythraeum IMS101

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008312
Total Bases: 7750108 bp
Number of genes: 5124
Released: Jul 6, 2006.
Modified: Aug 30, 2006.
Primary publication:

Tropheryma whipplei TW08/27

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004551
Total Bases: 925938 bp
Number of genes: 839
Released: Feb 28, 2003.
Modified: Feb 16, 2006.
Primary publication: Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei.

Tropheryma whipplei str. Twist

Sequenced by: Genoscope

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004572
Total Bases: 927303 bp
Number of genes: 862
Released: Aug 7, 2003.
Modified: Apr 3, 2006.
Primary publication: Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome.

Ureaplasma parvum serovar 3 str. ATCC 700970

Sequenced by: Univ.AL-Birmingham

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002162
Total Bases: 751719 bp
Number of genes: 653
Released: Oct 26, 2000.
Modified: Dec 3, 2005.
Primary publication: The complete sequence of the mucosal pathogen Ureaplasma urealyticum.

Vibrio cholerae O1 biovar eltor str. N16961

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002505
Total Bases: 2961149 bp
Number of genes: 2889
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002506
Total Bases: 1072315 bp
Number of genes: 1119
Released: Aug 22, 2000.
Modified: Jan 18, 2006.
Primary publication: DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.

Vibrio fischeri ES114

Sequenced by: W.M. Keck Microbial Communities and Cell-signaling Program

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006840
Total Bases: 2906179 bp
Number of genes: 2716
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006841
Total Bases: 1332022 bp
Number of genes: 1186
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006842
Total Bases: 45849 bp
Number of genes: 55
Released: Feb 11, 2005.
Modified: Apr 3, 2006.
Primary publication: he winnowing: establishing the squid-vibrio symbiosis.
Publication-2: Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners.

Vibrio parahaemolyticus RIMD 2210633

Sequenced by: Osaka University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004603
Total Bases: 3288558 bp
Number of genes: 3223
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004605
Total Bases: bp
Number of genes:
Released: Jun 2, 2000.
Modified: Dec 2, 2005.
Primary publication-1: A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains.
Primary publication-2: Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.

Vibrio vulnificus CMCP6

Sequenced by: Chonnam University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004459
Total Bases: 3281945 bp
Number of genes: 3049
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004460
Total Bases: 1844853 bp
Number of genes: 1575
Released: Sep 23, 2003.
Modified: Apr 4, 2006.
Primary publication: Characterization and pathogenic significance of Vibrio vulnificus antigens preferentially expressed in septicemic patients.

Vibrio vulnificus YJ016

Sequenced by: NHRI, China

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005139
Total Bases: 3354505 bp
Number of genes: 3387
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005140
Total Bases: 1857073 bp
Number of genes: 1711
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005128
Total Bases: 48508 bp
Number of genes: 69
Released: Dec 6, 2003.
Modified: Apr 3, 2006.
Primary publication: Comparative genome analysis of Vibrio vulnificus, a marine pathogen.

Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis

Sequenced by: Yale University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004344
Total Bases: 697724 bp
Number of genes: 651
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003425
Total Bases: 5280 bp
Number of genes: 6
Released: Sep 10, 2002.
Modified: Dec 2, 2005.
Primary publication: Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia.

Wolbachia endosymbiont of Drosophila melanogaster

Sequenced by: TIGR

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002978
Total Bases: 1267782 bp
Number of genes: 1309
Released: Feb 11, 2004.
Modified: Dec 2, 2005.
Primary publication: Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.

Wolbachia endosymbiont strain TRS of Brugia malayi

Sequenced by: New England Biolabs, Inc.

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006833
Total Bases: 1080084 bp
Number of genes: 940
Released: Feb 2, 2005.
Modified: Dec 3, 2005.
Primary publication: The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode.

Wolinella succinogenes DSM 1740

Sequenced by: Max-Plank-Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005090
Total Bases: 2110355 bp
Number of genes: 2091
Released: Sep 23, 2003.
Modified: Jan 18, 2006.
Primary publication: Complete genome sequence and analysis of Wolinella succinogenes.

Xanthomonas axonopodis pv. citri str. 306

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003919
Total Bases: 5175554 bp
Number of genes: 4374
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003921
Total Bases: 33700 bp
Number of genes: 42
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003922
Total Bases: 64920 bp
Number of genes: 73
Released: May 25, 2002.
Modified: Jan 17, 2006.
Primary publication: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Xanthomonas campestris pv. campestris str. 8004

Sequenced by: Chinese National HGC, Shanghai

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007086
Total Bases: 5148708 bp
Number of genes: 4370
Released: May 25, 2005.
Modified: Jan 18, 2006.
Primary publication: Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris.

Xanthomonas campestris pv. campestris str. ATCC 33913

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003902
Total Bases: 5076188 bp
Number of genes: 4242
Released: May 25, 2002.
Modified: Dec 2, 2005.
Primary publication: Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.

Xanthomonas campestris pv. vesicatoria str. 85-10

Sequenced by: Bielefeld University

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007508
Total Bases: 5178466 bp
Number of genes: 4604
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007504
Total Bases: 1852 bp
Number of genes: 2
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007505
Total Bases: 19146 bp
Number of genes: 25
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007506
Total Bases: 38116 bp
Number of genes: 44
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007507
Total Bases: 182572 bp
Number of genes: 179
Released: Oct 21, 2005.
Modified: Apr 21, 2006.
Primary publication: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.

Xanthomonas oryzae pv. oryzae KACC10331

Sequenced by: NIAB, Rural Development Administration

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006834
Total Bases: 4941439 bp
Number of genes: 4209
Released: Feb 2, 2005.
Modified: Apr 3, 2006.
Primary publication: The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice.

Xanthomonas oryzae pv. oryzae MAFF 311018

Sequenced by: National Institute of Agrobiological Sciences

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_007705
Total Bases: 4940217 bp
Number of genes: 4431
Released: Jan 4, 2006.
Modified: Mar 30, 2006.
Primary publication:

Xylella fastidiosa 9a5c

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002488
Total Bases: 2679306 bp
Number of genes: 2838
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002489
Total Bases: 1286 bp
Number of genes: 2
Purine/Keto/Coding Asymmetry Plot
Accession: NC_002490
Total Bases: 51158 bp
Number of genes: 65
Released: Jul 26, 2000.
Modified: Dec 2, 2005.
Primary publication: The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis.

Xylella fastidiosa Temecula1

Sequenced by: Sao Paulo state (Brazil) Consortium

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004556
Total Bases: 2519802 bp
Number of genes: 2123
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004554
Total Bases: 1346 bp
Number of genes: 2
Released: Jan 21, 2003.
Modified: Apr 3, 2006.
Primary publication: Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa.

Yersinia pestis Antiqua

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008150
Total Bases: 4702289 bp
Number of genes: 4273
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008120
Total Bases: 96471 bp
Number of genes: 99
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008121
Total Bases: 10777 bp
Number of genes: 9
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008122
Total Bases: 70299 bp
Number of genes: 89
Released: Jun 9, 2006.
Modified: Jun 13, 2006.
Primary publication: omplete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen.

Yersinia pestis CO92

Sequenced by: Sanger Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003143
Total Bases: 4653728 bp
Number of genes: 4113
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003131
Total Bases: 70305 bp
Number of genes: 102
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003132
Total Bases: 9612 bp
Number of genes: 9
Purine/Keto/Coding Asymmetry Plot
Accession: NC_003134
Total Bases: 96210 bp
Number of genes: 107
Released: Oct 5, 2001.
Modified: Jan 17, 2006.
Primary publication: Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis.

Yersinia pestis KIM

Sequenced by: Univ. Wisconsin

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004088
Total Bases: 4600755 bp
Number of genes: 4240
Purine/Keto/Coding Asymmetry Plot
Accession: NC_004838
Total Bases: 100990 bp
Number of genes: 119
Released: Jul 27, 2002.
Modified: Jan 26, 2006.
Primary publication: Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis.

Yersinia pestis Nepal516

Sequenced by: DOE Joint Genome Institute

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008149
Total Bases: 4534590 bp
Number of genes: 4090
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008118
Total Bases: 100918 bp
Number of genes: 104
Purine/Keto/Coding Asymmetry Plot
Accession: NC_008119
Total Bases: 10778 bp
Number of genes: 9
Released: Jun 9, 2006.
Modified: Jun 13, 2006.
Primary publication: Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen.

Yersinia pestis biovar Microtus str. 91001

Sequenced by: Academy of Military Medical Sciences, The Institute of Microbiology and Epidemiology, China

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005810
Total Bases: 4595065 bp
Number of genes: 4138
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005813
Total Bases: 70159 bp
Number of genes: 99
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005814
Total Bases: 21742 bp
Number of genes: 30
Purine/Keto/Coding Asymmetry Plot
Accession: NC_005815
Total Bases: 106642 bp
Number of genes: 128
Purine/Keto/Coding Asymmetry Plot
Accession: NC_00816
Total Bases: 9609 bp
Number of genes: 10
Released: Jun 4, 2004.
Modified: Aug 9, 2006.
Primary publication-1: Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans.
Primary publication-2: Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus.

Yersinia pseudotuberculosis IP 32953

Sequenced by: Lawrence Livermore National Laboratory

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006155
Total Bases: 4744671 bp
Number of genes: 4095
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006154
Total Bases: 27702 bp
Number of genes: 43
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006153
Total Bases: 68525 bp
Number of genes: 99
Released: Sep 11, 2004.
Modified: Sep 1, 2006.
Primary publication: Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis.

Zymomonas mobilis subsp. mobilis ZM4

Sequenced by: Macrogen Inc.

Local FTP
Purine/Keto/Coding Asymmetry Plot
Accession: NC_006526
Total Bases: 2056416 bp
Number of genes: 2058
Released: Dec 12, 2004.
Modified: DEc 3, 2005.
Primary publication: The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4.