Index of needle software
BMERC : Index of
needle software
This includes the needle protein threading program, and its
supporting code.
needle tools
The needle tools software implements core library and MRF score
file generation. Several independent versions of the documentation are
available, corresponding to various releases of the software:
- The latest publicly-available release of needle
tools (Release 1.6 of 15-Mar-00) is documented in the
http://bmerc-www.bu.edu/needle-doc/latest/
subdirectory (but note that "latest/" is really a
symbolic link to "rel-1.6/"). For instructions on how
to obtain and install this software, please refer to the needle tools installation
page.
- The current state of needle tools at BMERC is
documented in the
http://bmerc-www.bu.edu/needle-doc/new/
subdirectory. The software is continually evolving, so the
released documentation becomes increasingly out of date with
respect to the BMERC version; this edition of the documentation
usually tracks the BMERC code fairly closely.
- The previous release of needle tools (Release 1.5
of 16-Dec-99) is documented in the
http://bmerc-www.bu.edu/needle-doc/rel-1.5/
subdirectory.
The needle package
[documentation, such as it is, can be found in the current version of
the needle
tools pages. -- rgr, 17-Jun-98.]
Other software
- The ctserv server for managing cross-threading
jobs is described at ctserv.html. ctserv
installation instructions are at ctserv-install.html.
- The Comprehensive Structure Data Base refers to a perl
interface to data about a set of PDB structures, and is
documented on the csdb.html page. The
documentation is somewhat out of date, but that's OK, because
this software is now considered obsolete.
Other documentation
None of this is likely to be of interest except to people at BMERC.
- BMERC benchmarks
- For actual performance data on the machines at BMERC using these
and other programs, see the BMERC
benchmarks page.
- Accessing Unix files from the
Mac
- How to access files on your Unix account directly from the lab
Macintosh systems, as opposed to using FTP to move the files back
and forth.
Bob Rogers
<rogers@darwin.bu.edu>
Last modified: Mon Nov 20 15:18:36 EST 2000