Appendices

BMERC : Index of needle software : needle tools : Appendices

• Appendices
  • Glossary of BMERC jargon
  • How to download and install needle tools
    • System requirements
    • Installation steps
    • Multiple system installation
  • needle tools changes
    • Changes from Release 1.5 to Release 1.6
    • Changes from Release 1.4 to Release 1.5
    • Changes from Release 1.3 to Release 1.4
    • Changes from Release 1.2 to Release 1.3
    • Changes from Release 1.1 to Release 1.2
    • Changes from Release 1.0 to Release 1.1
    • Changes in Release 1.0
  • needle tools perl subroutines
    • Module usage hierarchy
    • Scripts referenced by modules
    • Alphabetical listing
    • Source file listing
      • align.pm subroutines
      • atom-coords.pm subroutines
      • atom-names.pm subroutines
      • chain-spec.pm subroutines
      • contact.pm subroutines
      • core-lib.pm subroutines
      • correct-align.pm subroutines
      • exp-lib.pm subroutines
      • fssp-lib.pm subroutines
      • hallucinate-cb.pm subroutines
      • html-hacks.pm subroutines
      • los-rules.pm subroutines
      • pdb-seq.pm subroutines
      • ppml.pm subroutines
      • print-multiple-alignments.pm subroutines
      • read-dssp-file.pm subroutines
      • rule-based-make.pm subroutines
      • rule-based-mrf.pm subroutines
      • score-lib.pm subroutines
      • seg-lib.pm subroutines
      • seq-lib.pm subroutines
      • std-pdbres.pm subroutines
      • vvenv-lib.pm subroutines
      • vvenv-rules.pm subroutines
      • weighted-scores.pm subroutines
    • Scripts with subroutines
      • aa-thresholds-to-envs.pl subroutines
      • blast-to-clique.pl subroutines
      • calculate-vv.pl subroutines
      • check-pdb-seqs.pl subroutines
      • compare-segs.pl subroutines
      • correct-alignment.pl subroutines
      • dssp4.pl subroutines
      • expand-dssp.pl subroutines
      • extract-toc.pl subroutines
      • fa2tbl.pl subroutines
      • filter-pdb-atoms.pl subroutines
      • fssp-core-corr.pl subroutines
      • install.pl subroutines
      • los.pl subroutines
      • make-align-depends.pl subroutines
      • make-core.pl subroutines
      • make-domain-core.pl subroutines
      • make-seq-file.pl subroutines
      • make-toc.pl subroutines
      • pdb-domain-seq.pl subroutines
      • pdb-to-dsm.pl subroutines
      • pdb-to-seq.pl subroutines
      • util-parse-dssp.pl subroutines
      • vvenv-pair-scores.pl subroutines